View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_32 (Length: 384)
Name: NF3103_low_32
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 45147776 - 45148145
Alignment:
| Q |
1 |
ttttctcgcttgactacaacagaaaaatgatattgatcaccctttttctatcctatgatataactagcttgaatgaatttagagattctcactgctttca |
100 |
Q |
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| T |
45147776 |
ttttctcgcttgactacaacagaaaaatg-tattgatcaccctttttctatcctatgatataactagcttgaatgaatttagagattctcactgctttca |
45147874 |
T |
|
| Q |
101 |
atcatttgactcttctcaattgtaggtggataatacatctgcacgggtgcagcaatggggtggacaaaccgtagaagttgacagcaatggggtggacaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45147875 |
atcatttgactcttctcaattgtaggtggataatacatctgcacgggtgcagcaatggggtggacaaaccgtagaagttgacagcaatggggtggacaag |
45147974 |
T |
|
| Q |
201 |
ccatagaagttgacgagacattgtattccgcataaagttgcacgtatctcccacttcctacctgttctcttgtaaaattagggataatggtctcaaaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45147975 |
ccatagaagttgacgagacattgtattccgcataaagttgcacgtatctcccacttcctacctgttctcttgtaaaattagggataatggtctcaaaaat |
45148074 |
T |
|
| Q |
301 |
cctttctgaccattttgcattgtaatgtagtagtttgtttctttcaattaggttcatgacataatctgtct |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45148075 |
cctttctgaccattttgcattgtaatgtagtagtttgtttctttcaattaggttcatgacataatctgtct |
45148145 |
T |
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