View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_34 (Length: 372)
Name: NF3103_low_34
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 30346014 - 30346358
Alignment:
| Q |
13 |
aatatcaggaagagaacaagaaagaaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagt |
112 |
Q |
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| T |
30346014 |
aatatcaggaagagaacaagaaagaaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagt |
30346113 |
T |
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| Q |
113 |
gtcttggcatggaatagcacttgagagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagc |
212 |
Q |
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| T |
30346114 |
gtcttggcatggaatagcacttgagagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagc |
30346213 |
T |
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| Q |
213 |
ttgcagggaattgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagag |
312 |
Q |
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| T |
30346214 |
ttgcagggaattgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagag |
30346313 |
T |
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| Q |
313 |
atttctatcaaattcctacaagaagagtgcatgtgattgttaatg |
357 |
Q |
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| T |
30346314 |
atttctatcaaattcctacaagaagagtgcatgtgattgttaatg |
30346358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 10841418 - 10841291
Alignment:
| Q |
223 |
ttgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatca |
322 |
Q |
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| T |
10841418 |
ttgttcctaaggttctaaatgagataagattcttcaacaaatattctcatcatgttgctattagtgatagttgtggtgagatgttaagagatgtttacca |
10841319 |
T |
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| Q |
323 |
aattcctacaagaagagtgcatgtgatt |
350 |
Q |
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|||||| | |||||||| ||||||||| |
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| T |
10841318 |
aattccaagtagaagagttcatgtgatt |
10841291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 10841604 - 10841481
Alignment:
| Q |
37 |
aaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatggaatagcacttga |
136 |
Q |
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|||| ||||||||| |||||||||||||||| ||||||||||||| | || | ||||| |||||||||| || || |||||||| |||||| | || |
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| T |
10841604 |
aaccttttgatgttgttcattcagaaagtgtagcacttcctcattggcttgcaaaagatcttccaaatcttgttgtatcctggcatggcatagcattgga |
10841505 |
T |
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| Q |
137 |
gagtttgcaatcaagtatttttca |
160 |
Q |
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| T |
10841504 |
aagcttgcaatcgagcatttttca |
10841481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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