View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_low_37 (Length: 352)

Name: NF3103_low_37
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_low_37
NF3103_low_37
[»] chr7 (3 HSPs)
chr7 (17-334)||(697718-698030)
chr7 (239-315)||(25066569-25066646)
chr7 (276-312)||(12846644-12846680)
[»] chr8 (2 HSPs)
chr8 (239-315)||(44953023-44953099)
chr8 (261-318)||(7970063-7970120)
[»] chr5 (2 HSPs)
chr5 (172-212)||(9358508-9358548)
chr5 (276-312)||(33281635-33281671)
[»] chr4 (2 HSPs)
chr4 (233-315)||(7817773-7817856)
chr4 (276-320)||(43457464-43457508)
[»] chr3 (4 HSPs)
chr3 (233-314)||(23482671-23482753)
chr3 (248-315)||(50508404-50508472)
chr3 (239-312)||(7681023-7681097)
chr3 (276-312)||(33711952-33711988)
[»] scaffold0896 (1 HSPs)
scaffold0896 (239-315)||(3757-3834)
[»] chr6 (2 HSPs)
chr6 (239-315)||(7080972-7081049)
chr6 (239-315)||(8811310-8811387)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 698030 - 697718
Alignment:
Q  17 ggggggactaggattctaagtagaagtgagaagaagtttatatattattgtaataacaaggaaccgtgctgaccaaggaacgtggggtgcaaggaattaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  698030 ggggggactaggattctaagtagaagtgagaagaagtttatatattattgtaataacaaggaaccgtgctgaccaaggaacgtggggtgcaaggaattaa 697931  T
Q  117 acagtcaaattacttatatttacttactggtttttgtgactgtgttattattttgactgcagccattggatcaaagcaatgcttcagattcactttactc 216  Q
    ||||||||||||||||||||||||     | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697930 acagtcaaattacttatatttact-----ggtgttgtgactgtgttattattttgactgcagccattggatcaaagcaatgcttcagattcactttactc 697836  T
Q  217 caagatgaagaaactgaagattaaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattcg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  697835 caagatgaagaaactgaagattaaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattca 697736  T
Q  317 aaaatactctcaaataag 334  Q
    ||||||||||||||||||    
T  697735 aaaatactctcaaataag 697718  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 25066569 - 25066646
Alignment:
Q  239 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    ||||||||||||| | ||||||| |||| || ||||| |||||||| |||| || ||||||||||| |||||||||||    
T  25066569 aaattaaattttactaaaggataattttgtcattttagggtgtaacaagaattaaatagggtgtaactagaaaaattc 25066646  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 12846680 - 12846644
Alignment:
Q  276 ggtgtaaccagaaatacatagggtgtaattagaaaaa 312  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  12846680 ggtgtaaccagaaatatatagggtgtaaatagaaaaa 12846644  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 44953099 - 44953023
Alignment:
Q  239 aaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    ||||||||||| |||||| |||| ||| || ||||| ||||||||||  |||||||||||||| |||||||||||||    
T  44953099 aaattaaatttcatttaaagataatttatcattttaaggtgtaaccatgaatacatagggtgtgattagaaaaattc 44953023  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 7970063 - 7970120
Alignment:
Q  261 attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattcgaa 318  Q
    ||||| || ||||| ||||||| |||||||| | |||||||||||||||||| |||||    
T  7970063 attttgtcattttagggtgtaatcagaaatataaagggtgtaattagaaaaagtcgaa 7970120  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 9358508 - 9358548
Alignment:
Q  172 actgcagccattggatcaaagcaatgcttcagattcacttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9358508 actgcagccattggatcaaagcaatgcttcagattcacttt 9358548  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 33281635 - 33281671
Alignment:
Q  276 ggtgtaaccagaaatacatagggtgtaattagaaaaa 312  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33281635 ggtgtaaccagaaaaacatagggtgtaaatagaaaaa 33281671  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 315
Target Start/End: Complemental strand, 7817856 - 7817773
Alignment:
Q  233 aagattaaattaaattttatttaaggat-attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    |||||||||||||||||||||||||||| ||||| || |||||  ||||||  || ||||| ||  ||||||||||||||||||    
T  7817856 aagattaaattaaattttatttaaggataattttgtcattttagagtgtaattaggaatacgtattgtgtaattagaaaaattc 7817773  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 43457508 - 43457464
Alignment:
Q  276 ggtgtaaccagaaatacatagggtgtaattagaaaaattcgaaaa 320  Q
    |||||||||||||||| ||||||||| | |||||||| |||||||    
T  43457508 ggtgtaaccagaaatatatagggtgtgaatagaaaaactcgaaaa 43457464  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 23482753 - 23482671
Alignment:
Q  233 aagattaaattaaattttatttaaggat-attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaatt 314  Q
    |||||||||||||||||||||||||||| ||||| || |||||  |||||||||  |||||||    ||||||||||||||||    
T  23482753 aagattaaattaaattttatttaaggataattttatcattttagtgtgtaaccatgaatacatgaaatgtaattagaaaaatt 23482671  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 315
Target Start/End: Original strand, 50508404 - 50508472
Alignment:
Q  248 tttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    |||||||||||||| |||| || ||||| ||||||||||| |||  || ||||||||||||||||||||    
T  50508404 tttatttaaggataattttatcattttagggtgtaaccaggaatgtatggggtgtaattagaaaaattc 50508472  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 7681023 - 7681097
Alignment:
Q  239 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaa 312  Q
    ||||||||||||||  |||| || |||| || ||||| |||| |||||||| || ||||||||||||||||||||    
T  7681023 aaattaaattttatggaagggtaattttgtcattttagggtgcaaccagaattaaatagggtgtaattagaaaaa 7681097  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 33711988 - 33711952
Alignment:
Q  276 ggtgtaaccagaaatacatagggtgtaattagaaaaa 312  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33711988 ggtgtaaccagaaaaacatagggtgtaaatagaaaaa 33711952  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 3757 - 3834
Alignment:
Q  239 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| |  ||||||||||||||||||||    
T  3757 aaatcaaattttatgtaaggataattttatcattttggggtgtaaccaggaatatacggggtgtaattagaaaaattc 3834  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 7081049 - 7080972
Alignment:
Q  239 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| | || ||||||||||||||||||    
T  7081049 aaatcaaattttatctaaggataattttatcattttggggtgtaaccaggaatatacagtgtgtaattagaaaaattc 7080972  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 8811310 - 8811387
Alignment:
Q  239 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 315  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| |  ||||||||||||||||||||    
T  8811310 aaatcaaattttatgtaaggataattttatcattttggggtgtaaccaggaatatacggggtgtaattagaaaaattc 8811387  T

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