View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3103_low_39 (Length: 347)
Name: NF3103_low_39
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 69 - 324
Target Start/End: Complemental strand, 31083238 - 31082986
Alignment:
| Q |
69 |
aaaagaattaatgtttgtttaagttttctgaatnnnnnnngttatgcaaattttnnnnnnnttaataaacttgttgatggacgacatattactagtttac |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
31083238 |
aaaagaattaatgtttgtttaagttttctgaataaaaaaagttatgcaaatttttaaaaaattaataaacttgttaatggac---atattactagtttac |
31083142 |
T |
|
| Q |
169 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31083141 |
aaaattaatcatatttattattttttaagcaaaagtgaatcatatttcttaataaatttacactttataatgtatttggtaaataaaaatttgcaatgaa |
31083042 |
T |
|
| Q |
269 |
aatcagttattgcattttcgattcgatgatcactctcataccaggttcaaagggtt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31083041 |
aatcagttattgcattttcgattcgatgatcactctcataccgggttcaaagggtt |
31082986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 31083324 - 31083253
Alignment:
| Q |
13 |
aatatccttgacatagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31083324 |
aatatccttgacatagattagttaattaatcaaacatttgctacatataacatgataaaagaattaatgttt |
31083253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University