View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3103_low_4 (Length: 660)
Name: NF3103_low_4
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 24)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Complemental strand, 36221652 - 36221014
Alignment:
| Q |
18 |
tcttcttggttagccatagcaacacttggtggagttgatgctgaagcaaaagctgagttgataattttgataataatgcgcctaatatcaaaatcattgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221652 |
tcttcttggttagccatagcaacacttggtggagttgatgctgaagcaaaagcagagttgataattttgataataatgcgcctaatatcaaaatcattgg |
36221553 |
T |
|
| Q |
118 |
agacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaac |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221552 |
agacacacacccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaac |
36221453 |
T |
|
| Q |
216 |
tatgggaataacaca--aatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctccca |
313 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36221452 |
tatgggaataacacacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctgtcattctccctccca |
36221353 |
T |
|
| Q |
314 |
ataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36221352 |
ataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccgt |
36221253 |
T |
|
| Q |
414 |
cagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatac |
513 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36221252 |
cagctgccaccttattcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcatac |
36221153 |
T |
|
| Q |
514 |
cttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcct |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221152 |
cttcattcgagtgctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcct |
36221053 |
T |
|
| Q |
614 |
caaccattcacgcagagcatgttgttggttcttcatctc |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36221052 |
caaccattcacgcagagcatgttgttggttcttcttctc |
36221014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 57 - 652
Target Start/End: Complemental strand, 36217628 - 36217021
Alignment:
| Q |
57 |
gctgaagcaaaagctgagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatcta |
154 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| || | || |||||||||||| ||||||||| ||| ||||||||||| |||| ||||||| |
|
|
| T |
36217628 |
gctgaagcaaaaacggagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatcta |
36217529 |
T |
|
| Q |
155 |
tcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacaca--aatttttgtcaccatctccatc |
252 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||| || || | | ||||| ||||| |
|
|
| T |
36217528 |
tcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccata |
36217429 |
T |
|
| Q |
253 |
tccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattct |
352 |
Q |
| |
|
|| ||||||| | | ||||||||| | ||||||| ||||| | ||||||||||| || |||||||||||| |||||| | |||| |||| |||| |
|
|
| T |
36217428 |
accttgaggatcggaatccatcaaaagctcgataattgcttccttgtcattctcccttcctataacacttgaaacatcaatatgggaataggtgatttct |
36217329 |
T |
|
| Q |
353 |
ctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttga |
452 |
Q |
| |
|
|| | |||||| | | | || |||||| |||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
36217328 |
ctattgtgcacagaaagtccgggctcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttga |
36217229 |
T |
|
| Q |
453 |
ttttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnn |
552 |
Q |
| |
|
||| | |||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||||| || ||||| |||||||||| |||||||| |
|
|
| T |
36217228 |
tttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctt |
36217129 |
T |
|
| Q |
553 |
nnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggtt |
643 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||| |||||||||| || |||||||| |||| |
|
|
| T |
36217128 |
tctcc-tgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctgccttaaccattcacacaaggcatgttgccggtt |
36217030 |
T |
|
| Q |
644 |
cttcatctc |
652 |
Q |
| |
|
|||| |||| |
|
|
| T |
36217029 |
cttcttctc |
36217021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 97 - 545
Target Start/End: Original strand, 36225994 - 36226446
Alignment:
| Q |
97 |
gcctaatatcaaaatcattggaga--cacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtctt |
194 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||| |||||||||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36225994 |
gcctaatatcaaaatcatcagagatacacacccacatcttcaattggaaaagatcatcaaccctcttatcgttgaacaccaattttgcaagtgtggtctt |
36226093 |
T |
|
| Q |
195 |
ccccaagccaccaattccaactatgggaata--acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttct |
292 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||| |||||||| |||| || |||||||| || ||||||||||| |||||||| || |
|
|
| T |
36226094 |
ccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatca |
36226193 |
T |
|
| Q |
293 |
tccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcg |
392 |
Q |
| |
|
| ||| ||||||||||| || || ||| |||||||||||||| |||||||| | ||||||| |||||||| || | | ||||| ||| | |
|
|
| T |
36226194 |
ttcctctcattctcccttcctatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctg |
36226293 |
T |
|
| Q |
393 |
caagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttga |
492 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | || |||| ||||||||||||| ||||| | || |
|
|
| T |
36226294 |
caagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactaga |
36226393 |
T |
|
| Q |
493 |
ggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa |
545 |
Q |
| |
|
||||||||| || |||| ||||||||| | |||||||| ||||||| ||||| |
|
|
| T |
36226394 |
ggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa |
36226446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 154 - 539
Target Start/End: Original strand, 35982180 - 35982561
Alignment:
| Q |
154 |
atcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacaaatttttgtcaccatctccatct |
253 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||| | || | ||| ||||| |
|
|
| T |
35982180 |
atcctctcatcattgaaaaccaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagctttt----atcaccatca |
35982275 |
T |
|
| Q |
254 |
ccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctc |
353 |
Q |
| |
|
|| |||||||| ||| |||||||||| ||||||||||| |||||||| ||||| || || || ||| |||||||||| | |||||||| ||||||| |
|
|
| T |
35982276 |
ccttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctc |
35982375 |
T |
|
| Q |
354 |
tcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgat |
453 |
Q |
| |
|
| | ||||||| | | |||| ||||||| |||||| |||||||||| | ||||| |||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
35982376 |
ttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgat |
35982475 |
T |
|
| Q |
454 |
tttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt |
539 |
Q |
| |
|
| ||||| |||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
35982476 |
tcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt |
35982561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 154 - 539
Target Start/End: Original strand, 36003592 - 36003973
Alignment:
| Q |
154 |
atcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacaaatttttgtcaccatctccatct |
253 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||| | || | ||| ||||| |
|
|
| T |
36003592 |
atcctctcatcattgaaaaccaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagctttt----atcaccatca |
36003687 |
T |
|
| Q |
254 |
ccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctc |
353 |
Q |
| |
|
|| |||||||| ||| |||||||||| ||||||||||| |||||||| ||||| || || || ||| |||||||||| | |||||||| ||||||| |
|
|
| T |
36003688 |
ccttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctc |
36003787 |
T |
|
| Q |
354 |
tcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgat |
453 |
Q |
| |
|
| | ||||||| | | |||| ||||||| |||||| |||||||||| | ||||| |||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
36003788 |
ttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgat |
36003887 |
T |
|
| Q |
454 |
tttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt |
539 |
Q |
| |
|
| ||||| |||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
36003888 |
tcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt |
36003973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 226 - 548
Target Start/End: Original strand, 35973546 - 35973868
Alignment:
| Q |
226 |
acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaa |
325 |
Q |
| |
|
||||||| |||| ||||| |||||||| || |||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973546 |
acacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataacacttgaa |
35973645 |
T |
|
| Q |
326 |
gcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacct |
425 |
Q |
| |
|
||||| || | |||| ||| ||||||||||| |||| |||| | ||||| || |||||| ||||||| |||||| | |||| || ||||| |||| |
|
|
| T |
35973646 |
gcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcccatcggctgctacct |
35973745 |
T |
|
| Q |
426 |
tattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagt |
525 |
Q |
| |
|
||| ||| |||| | ||| ||||||| | ||| ||| ||| |||||||| | ||||||| ||||| ||||| |||| || ||||||||| | || |
|
|
| T |
35973746 |
tatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgt |
35973845 |
T |
|
| Q |
526 |
gctgccagaagctttcacaaatt |
548 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
35973846 |
gctgccagaagcatccacaaatt |
35973868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 226 - 548
Target Start/End: Original strand, 35994958 - 35995280
Alignment:
| Q |
226 |
acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaa |
325 |
Q |
| |
|
||||||| |||| ||||| |||||||| || |||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35994958 |
acacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataacacttgaa |
35995057 |
T |
|
| Q |
326 |
gcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacct |
425 |
Q |
| |
|
||||| || | |||| ||| ||||||||||| |||| |||| | ||||| || |||||| ||||||| |||||| | |||| || ||||| |||| |
|
|
| T |
35995058 |
gcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcccatcggctgctacct |
35995157 |
T |
|
| Q |
426 |
tattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagt |
525 |
Q |
| |
|
||| ||| |||| | ||| ||||||| | ||| ||| ||| |||||||| | ||||||| ||||| ||||| |||| || ||||||||| | || |
|
|
| T |
35995158 |
tatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgt |
35995257 |
T |
|
| Q |
526 |
gctgccagaagctttcacaaatt |
548 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
35995258 |
gctgccagaagcatccacaaatt |
35995280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 35939415 - 35939622
Alignment:
| Q |
72 |
gagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattga |
169 |
Q |
| |
|
|||||||| ||||| ||||| || |||| |||||||| |||||||||||||| ||| |||||||||||||||| | || | |||||||||||||| |
|
|
| T |
35939415 |
gagttgattattttaataattatctgcctgatatcaaactcattggagacacacaaccacatcttcaattggaaaagttgattcaccctcttatcattga |
35939514 |
T |
|
| Q |
170 |
acaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacac--aaatttttgtcaccatctccatctccatgaggatgcgg |
267 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || |||||||| || ||||||||||||| ||| |||| |||||||| ||||| || |||||||| || |
|
|
| T |
35939515 |
acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtgg |
35939614 |
T |
|
| Q |
268 |
ttgcatca |
275 |
Q |
| |
|
|||||||| |
|
|
| T |
35939615 |
ttgcatca |
35939622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 416 - 627
Target Start/End: Original strand, 35958415 - 35958634
Alignment:
| Q |
416 |
gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct |
515 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| || | ||| ||||||||||||| ||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
35958415 |
gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct |
35958514 |
T |
|
| Q |
516 |
tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgta |
606 |
Q |
| |
|
||| || ||||| |||||||||| ||||| ||| |||||||||||| ||||||| ||||||||||||||||||| || ||||| | |
|
|
| T |
35958515 |
tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaa |
35958613 |
T |
|
| Q |
607 |
cctgcctcaaccattcacgca |
627 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
35958614 |
tctgcctcagccattcacgca |
35958634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 120 - 290
Target Start/End: Original strand, 35958123 - 35958295
Alignment:
| Q |
120 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
219 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||| ||||||||||||||||||||| || |||||||||| ||||| ||||| || |||||||| ||||| |
|
|
| T |
35958123 |
acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacctccaattcccactatt |
35958222 |
T |
|
| Q |
220 |
ggaataacac--aaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataattt |
290 |
Q |
| |
|
||||| |||| | | | || |||||||| |||||||| ||||||| || ||||||||||| |||||||||| |
|
|
| T |
35958223 |
ggaatgacacagagactattatcaccatcaccatctccgcgaggatgtggctgcatcaaaagattgataattt |
35958295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 413 - 627
Target Start/End: Original strand, 35977867 - 35978089
Alignment:
| Q |
413 |
tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata |
512 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| | ||| |||||||||||||||| | ||||||| ||||||||||| ||||||| || |
|
|
| T |
35977867 |
tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta |
35977966 |
T |
|
| Q |
513 |
ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt |
603 |
Q |
| |
|
|||||| || |||| | |||||||||||||| ||| |||||||||||| | ||||| ||||||||||||||||||| || |||| |
|
|
| T |
35977967 |
ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt |
35978065 |
T |
|
| Q |
604 |
gtacctgcctcaaccattcacgca |
627 |
Q |
| |
|
| | |||||||| ||||||||||| |
|
|
| T |
35978066 |
gaatctgcctcagccattcacgca |
35978089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 413 - 627
Target Start/End: Original strand, 35999279 - 35999501
Alignment:
| Q |
413 |
tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata |
512 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| | ||| |||||||||||||||| | ||||||| ||||||||||| ||||||| || |
|
|
| T |
35999279 |
tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta |
35999378 |
T |
|
| Q |
513 |
ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt |
603 |
Q |
| |
|
|||||| || |||| | |||||||||||||| ||| |||||||||||| | ||||| ||||||||||||||||||| || |||| |
|
|
| T |
35999379 |
ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt |
35999477 |
T |
|
| Q |
604 |
gtacctgcctcaaccattcacgca |
627 |
Q |
| |
|
| | |||||||| ||||||||||| |
|
|
| T |
35999478 |
gaatctgcctcagccattcacgca |
35999501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 35965669 - 35965738
Alignment:
| Q |
158 |
tcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataac |
227 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
35965669 |
tcttatcattgaacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac |
35965738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 284
Target Start/End: Original strand, 35946918 - 35947084
Alignment:
| Q |
120 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
219 |
Q |
| |
|
||||| ||| |||||||| ||||||| | || |||||||||||||||||||||| || | |||||||||||||||| ||| || |||||||| ||||| |
|
|
| T |
35946918 |
acacacccacatcttcaactggaaaagttgatgtatcctcttatcattgaacaccgacttcgcaagtgtggtcttccacaaacctccaattcccactatt |
35947017 |
T |
|
| Q |
220 |
ggaataacac--aaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttga |
284 |
Q |
| |
|
||||| |||| | | | || |||||||| ||||| || |||||||| || ||||||||||| |||| |
|
|
| T |
35947018 |
ggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtggctgcatcaaaagattga |
35947084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 545
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
| Q |
413 |
tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata |
512 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| | ||| |||||||||||| ||| | ||||||| ||||||||||| |||||| || |
|
|
| T |
35947207 |
tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta |
35947306 |
T |
|
| Q |
513 |
ccttcattcgagtgctgccagaagctttcacaa |
545 |
Q |
| |
|
||||| || ||||| | |||||||||||||| |
|
|
| T |
35947307 |
acttcacccgtgtgcttcgagaagctttcacaa |
35947339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 35977578 - 35977690
Alignment:
| Q |
120 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
219 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||| ||||||||||||||||||||| || |||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
35977578 |
acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattcccactatt |
35977677 |
T |
|
| Q |
220 |
ggaataacacaaa |
232 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
35977678 |
ggaatgacacaaa |
35977690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 35998990 - 35999102
Alignment:
| Q |
120 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
219 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||| ||||||||||||||||||||| || |||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
35998990 |
acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattcccactatt |
35999089 |
T |
|
| Q |
220 |
ggaataacacaaa |
232 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
35999090 |
ggaatgacacaaa |
35999102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 29602862 - 29602987
Alignment:
| Q |
105 |
tcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagc |
202 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||| ||| ||||| | || |||| |||||||||||||||||| | |||||||||| ||||| ||||||| |
|
|
| T |
29602862 |
tcaaaatcatcggagacacacacccacatctttaatgggaaagtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagc |
29602961 |
T |
|
| Q |
203 |
caccaattccaactatgggaataaca |
228 |
Q |
| |
|
| ||||||||||| || ||||||||| |
|
|
| T |
29602962 |
ctccaattccaacaataggaataaca |
29602987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 35955182 - 35955282
Alignment:
| Q |
130 |
atcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacac |
229 |
Q |
| |
|
|||||||||| |||||| | ||| | ||| | |||||||||||| ||| |||||||||||||||| ||||| || ||||| || | |||||||||||||| |
|
|
| T |
35955182 |
atcttcaatttgaaaatttgatccaccctttcatcattgaacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaataacac |
35955281 |
T |
|
| Q |
230 |
a |
230 |
Q |
| |
|
| |
|
|
| T |
35955282 |
a |
35955282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 29750378 - 29750307
Alignment:
| Q |
157 |
ctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca |
228 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
29750378 |
ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataaca |
29750307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 29743341 - 29743270
Alignment:
| Q |
157 |
ctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca |
228 |
Q |
| |
|
||||||||||||||||| | ||||||| || ||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
29743341 |
ctcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaacaataggaataaca |
29743270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 628
Target Start/End: Original strand, 35973905 - 35973956
Alignment:
| Q |
577 |
catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag |
628 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
35973905 |
catcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag |
35973956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 628
Target Start/End: Original strand, 35995317 - 35995368
Alignment:
| Q |
577 |
catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcag |
628 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
35995317 |
catcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcag |
35995368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 35926323 - 35926373
Alignment:
| Q |
577 |
catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgca |
627 |
Q |
| |
|
||||||||||||||||||| || ||||| | |||||||| ||||||||||| |
|
|
| T |
35926323 |
catcttcagcatcatagcatatattttgaatctgcctcagccattcacgca |
35926373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 120 - 333
Target Start/End: Original strand, 18125831 - 18126046
Alignment:
| Q |
120 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
219 |
Q |
| |
|
||||| ||| ||||||||||| || | |||||||| |||||||||||||| || | | |||| | ||||||||||||||||||||||||||| || ||| |
|
|
| T |
18125831 |
acacacccacatcttcaattgaaagagttcatctattctcttatcattgaaaacaagctttgccaatgtggtcttccccaagccaccaattcccaccatg |
18125930 |
T |
|
| Q |
220 |
ggaataacacaaat--ttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataa |
317 |
Q |
| |
|
||||||||| | | |||| |||||||| ||||| ||||||||||| | |||||||||||| |||||||| |||||||||||| |||| || || || | |
|
|
| T |
18125931 |
ggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatcaaaagcttgataatctcttccctatcactctctcttcctatta |
18126030 |
T |
|
| Q |
318 |
cacttgaagcatcaac |
333 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
18126031 |
cactcaaagcatcaac |
18126046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 18118138 - 18118267
Alignment:
| Q |
73 |
agttgataattttgataataatgcgcctaatatcaaaatcattggagacacatcc--aaatcttcaattggaaaatatcatctatcctcttatcattgaa |
170 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||| ||||| |||||||||||| | | ||||||||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
18118138 |
agttgattattttgataattatgtgcataatataaaaataattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaa |
18118237 |
T |
|
| Q |
171 |
caccaaccttgcaagtgtggtcttccccaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
18118238 |
taccaactttgcaagtgtggtcttccccaa |
18118267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 623
Target Start/End: Original strand, 18126298 - 18126344
Alignment:
| Q |
577 |
catcttcagcatcatagcagatgttttgtacctgcctcaaccattca |
623 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
18126298 |
catcttcagcatcatagcagatattttgtatctgcctccgccattca |
18126344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 521
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
| Q |
392 |
gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg |
491 |
Q |
| |
|
|||||||||||| | ||||| || | ||| ||||||| |||||||| ||||| ||||| |||| | || |||||||| ||| ||||| ||| ||| | |
|
|
| T |
18126105 |
gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg |
18126204 |
T |
|
| Q |
492 |
aggaagaaaacaagtggcataccttcattc |
521 |
Q |
| |
|
||||| | || ||||||| ||||||||||| |
|
|
| T |
18126205 |
aggaacagaagaagtggcgtaccttcattc |
18126234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 120 - 228
Target Start/End: Complemental strand, 49340653 - 49340545
Alignment:
| Q |
120 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
219 |
Q |
| |
|
||||| ||| ||||||||| | ||| | ||||||| ||||||||||| ||||| | | |||||||||| || || || || || ||||||||||| || |
|
|
| T |
49340653 |
acacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcctccaattccaacaata |
49340554 |
T |
|
| Q |
220 |
ggaataaca |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
49340553 |
ggaataaca |
49340545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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