View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_40 (Length: 344)
Name: NF3103_low_40
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 3532073 - 3531760
Alignment:
| Q |
11 |
aatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggataacaagaatcaaagattcttatcttgtatgtta |
110 |
Q |
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| T |
3532073 |
aatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggatgacaagaatcaaagattcttgtcatgtatgtta |
3531974 |
T |
|
| Q |
111 |
gcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaagtaatgtgagtgagcattatggtc |
210 |
Q |
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| T |
3531973 |
gcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaagtaatgtgagtgagcattatggtc |
3531874 |
T |
|
| Q |
211 |
tatggaatattgattttaaatcacttcgatatccagattttcctcaaaggtttcaacttgtccaaaagaagcttctaggtatgtcatttttacaccttaa |
310 |
Q |
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| T |
3531873 |
tatggaatattgattttaaatcacttcgatatccagattttcctcaaaggtttcaacttgtccaaaagaagcttctaggtatgtcatttttacaccttaa |
3531774 |
T |
|
| Q |
311 |
taaagttgaattac |
324 |
Q |
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|||||||||||||| |
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| T |
3531773 |
taaagttgaattac |
3531760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 3527646 - 3527345
Alignment:
| Q |
11 |
aatgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggataacaagaatcaaa------------gattctta |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||| ||||||| |
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| T |
3527646 |
aatgagtggttctaaccctaatccattggttatgagtgaatttggtgctgacttgactgctattgatgacaagaatcaaacattcaatcaaagattcttg |
3527547 |
T |
|
| Q |
99 |
tcttgtatgttagcttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaagtaatgtgagtg |
198 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |
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| T |
3527546 |
tcatgtatgttagcttatcttgctggggttgacttggattgggctttatggactgcacaaggttcttactatattagagataaagaaagtaatgcgagtg |
3527447 |
T |
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| Q |
199 |
agcattatggtctatggaatattgattttaaatcacttcgatatccagattttcctcaaaggtttcaacttgtccaaaagaagcttctaggtatgtcatt |
298 |
Q |
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||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
3527446 |
agccttttggtatatggaatattgattttaaatcacttcgatatccagatttttctcaaagatttcaacttgtgcaaaagaagcttctaggtatgtcatt |
3527347 |
T |
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| Q |
299 |
tt |
300 |
Q |
| |
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|| |
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| T |
3527346 |
tt |
3527345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 3549353 - 3549063
Alignment:
| Q |
12 |
atgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggataacaagaatcaaagattcttatcttgtatgttag |
111 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| | |||||| |||| ||| || | ||||| |||| || || ||||| || | |
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| T |
3549353 |
atgagtggttctaaccctaatccattggttatgactgaatttggtatggacatggaaaatatagatgaccaaaatcagagatatttgtcatgtattttgg |
3549254 |
T |
|
| Q |
112 |
cttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaagtaatgtgagtgagcattatggtct |
211 |
Q |
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||||||||| ||| ||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||| |||| || |||||| || ||||||||| | |
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| T |
3549253 |
cttatcttggtggagtggatttagattgggctttgtgggctgcacaaggttcttactatattagagaaaaagaaaatattgtgagggaacattatggttt |
3549154 |
T |
|
| Q |
212 |
atggaatattgattttaaatcacttcgatatccagattttcctcaaaggtttcaacttgtccaaaagaagcttctaggtatgtcattttta |
302 |
Q |
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||||| ||||||||||| ||||||||||||| ||| || |||||||||||||||||| | || |||||||||||||||||| |||||||| |
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| T |
3549153 |
atggagtattgattttagttcacttcgatatcaagaattccctcaaaggtttcaacttttgcagaagaagcttctaggtatggcattttta |
3549063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 3554944 - 3554654
Alignment:
| Q |
12 |
atgagtggttctaaccctaatccattggttatgagtgaatttggtttagacatgactgatatggataacaagaatcaaagattcttatcttgtatgttag |
111 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||| | | ||| |||| ||| |||||| ||||||||||| | |
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| T |
3554944 |
atgagtggttctaaccctaaaccattggttatgagtgaatttggtatcaacatggaaaataagactgacatgaatgaaaaattcttgtcttgtatgttgg |
3554845 |
T |
|
| Q |
112 |
cttatcttgctggggtggacttggattgggctttatggactgcacaaggttcttactatattagagaaaaggaaagtaatgtgagtgagcattatggtct |
211 |
Q |
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| T |
3554844 |
catatcttgtaggtgtggatttggattgggcattgtgggctgcacaaggtgcttactatataagaaaaaatgaaattattgtgagtgagacttttggtat |
3554745 |
T |
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| Q |
212 |
atggaatattgattttaaatcacttcgatatccagattttcctcaaaggtttcaacttgtccaaaagaagcttctaggtatgtcattttta |
302 |
Q |
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||||| | ||||||| ||||| ||||| || ||||||||||||||||||||| | || ||||||||| |||||||| ||||||| |
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| T |
3554744 |
atggagttatgattttcgcacacttagatatattgaatttcctcaaaggtttcaacttatgcataagaagcttttaggtatgagattttta |
3554654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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