View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_low_44 (Length: 316)

Name: NF3103_low_44
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_low_44
NF3103_low_44
[»] chr4 (1 HSPs)
chr4 (34-316)||(28168604-28168886)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 34 - 316
Target Start/End: Original strand, 28168604 - 28168886
Alignment:
Q  34 atttttaacaaggatgtctttacatggtgtattcaactttcgtttcctagcttcttcaaacttcttaaattcatccatcatgtctcctatcttgtcgaca 133  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28168604 atttctaacaaggatgtccttacatggtgtattcaactttcttttcctagcttcttcaaacttcttaaattcatccatcatgtctcctatcttgtcgaca 28168703  T
Q  134 accactcttatcttctcgtgtatatcctcatctcagtagaagccatacacttatgaagagttgttttattctctttctttattaattctttcaatatcgt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28168704 accactcttatcttctcgtgtatatcctcatctcagtagaagccatacatttatgaagagttgttttattctctttctttattaactctttcaatatcgt 28168803  T
Q  234 ttgatgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatctttccaatttcatcaacgtttcatgcacct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28168804 ttgatgattcctaatgtttcccaaaatatacgagttcaattctcttgtatatcttttcaatttcatcaacgtttcatgcacct 28168886  T

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