View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_47 (Length: 277)
Name: NF3103_low_47
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 3532360 - 3532099
Alignment:
| Q |
1 |
ggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatttgtttctggct |
100 |
Q |
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|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532360 |
ggtccaggtcaaaacatagacaattggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatttgtttctggct |
3532261 |
T |
|
| Q |
101 |
ttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgtacgaggtacattcctatgcatggtcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3532260 |
ttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacacaagcataggagacaaattggtgtacgaggtacattcctatgcatggtcaac |
3532161 |
T |
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| Q |
201 |
tgggtcaccaaaggattggattgtgaaaccattgaaccaaaaatgtgccaatgtaatgaatg |
262 |
Q |
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| T |
3532160 |
tgggtcaccaaaggattggattgtgaaaccattgaaccaaaaatgtgccaatgtaatgaatg |
3532099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3527933 - 3527730
Alignment:
| Q |
1 |
ggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatttgtttctggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
3527933 |
ggtccaagtcaaaacataagcagttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatcccaatgttcttgtatttgtttctggct |
3527834 |
T |
|
| Q |
101 |
ttaactatgacactgatttaagcttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgtacgaggtacattcctatgcatggtcaac |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3527833 |
ttaactatgacattgatttaagcttcttgaaaacaaatcctctaaacacaagcataggagacaaattggtgtacgaggtacattcctatgcatggtcaac |
3527734 |
T |
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| Q |
201 |
tggg |
204 |
Q |
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|||| |
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| T |
3527733 |
tggg |
3527730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 3549612 - 3549398
Alignment:
| Q |
34 |
tacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatttgtttctggctttaactatgacactgatttaagcttcttgaaaa |
133 |
Q |
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|||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| | |
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| T |
3549612 |
tacatgagccaaggagtaacaacagtccacaaagcaaatccaaatgttctagtttttgtttctggcttaaattatgacactgatttaagcttcttgaaga |
3549513 |
T |
|
| Q |
134 |
caaatcctctaaacataagcataggagacaaattggtgtacgaggtacattcctatgcatggtcaactgggtcaccaaaggattggattgtgaaaccatt |
233 |
Q |
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| T |
3549512 |
caaagcctctaaatgttaacataggagacaaattggtgtatgaagtacattcctatgcatgatcaatagggtcaccaaaagattggattgagcaaccagt |
3549413 |
T |
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| Q |
234 |
gaaccaaaaatgtgc |
248 |
Q |
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||| |||||||||| |
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| T |
3549412 |
gaataaaaaatgtgc |
3549398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 3555209 - 3554972
Alignment:
| Q |
24 |
ttggcagaagtacatgagccaaggagcaacaacagttcacaaagaaaatccaaatgttctagtatttgtttctggctttaactatgacactgatttaagc |
123 |
Q |
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|||||| |||||||||||||||||||| ||||| ||||| |||| ||||||| |||||||||| |||||||||||||| || |||||||||||||||||| |
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| T |
3555209 |
ttggcacaagtacatgagccaaggagctacaactgttcataaagcaaatccagatgttctagtctttgtttctggcttaaattatgacactgatttaagc |
3555110 |
T |
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| Q |
124 |
ttcttgaaaacaaatcctctaaacataagcataggagacaaattggtgtacgaggtacattcctatgcatggtcaactgggtcaccaaaggattggattg |
223 |
Q |
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|||||||| ||||| |||||||| | | |||||| ||||||||||||||||||||||||||||||||||||||| |||| || || |||||| |
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| T |
3555109 |
ttcttgaagacaaagcctctaaatgttaacatagggaacaaattggtgtacgaggtacattcctatgcatggtcaagtggggaacgaagtgattgggaca |
3555010 |
T |
|
| Q |
224 |
tgaaaccattgaaccaaaaatgtgccaatgtaatgaat |
261 |
Q |
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| T |
3555009 |
agcaaccattgaacaaaaaatgtgctaatgtaatgaat |
3554972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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