View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_50 (Length: 252)
Name: NF3103_low_50
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 43663796 - 43663561
Alignment:
| Q |
1 |
ttctttctttcttcttttaatgttaaaagtgaaatttcaatcaatgacaaaagata---acacagaaattggatcatcaaagtctactttgaattgaaaa |
97 |
Q |
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| T |
43663796 |
ttctttctttcttcttttaatgttaaaagtgaaatttcaatcaatgacaaaagataggtacacagaaattggatcatcaaagtctactttgaattgaaaa |
43663697 |
T |
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| Q |
98 |
caactatttcatgtgtggacttttttataaaaccaaattaacacaaacaaacaatggtttatgataattatggagtgactaattagtttgttaattacct |
197 |
Q |
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| T |
43663696 |
caactatttcatgtgtggacttttttataaaaccaaattaacacaa----acaatggtttatgataattatggagtgattaattagtttgttaattacct |
43663601 |
T |
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| Q |
198 |
ttccaaatggagaaactagctggtgaagtgctgttattct |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43663600 |
ttccaaatggagaaactagctggtgaagtgctgttattct |
43663561 |
T |
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