View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_52 (Length: 250)
Name: NF3103_low_52
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_52 |
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| [»] chr6 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 5986955 - 5987119
Alignment:
| Q |
95 |
aacacattttgtgttttttatccaaaa--aactcattagtcattaacgtatagtttaaactttagtaaaaaagaagtatatag-------tttaaacttc |
185 |
Q |
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| T |
5986955 |
aacacattttgtgttttttatccaaaaaaaactcattagtcgttaacgtatagtttaaactttagtataaaagaagtatatagtttaaactttaaacttc |
5987054 |
T |
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| Q |
186 |
taatacatatataaagaaaatggaattagatgaatgaagaaagaagaaataaaaagactatatga |
250 |
Q |
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| T |
5987055 |
taatacgtatataaagaaaatggaattagatgaatgacaaaagaagaaataaaaaaactatatga |
5987119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 193
Target Start/End: Complemental strand, 8701623 - 8701549
Alignment:
| Q |
118 |
aaaaaactcattagtcattaacgtatagtttaaactttagtaaaaaagaagtatatagtttaaacttctaatacat |
193 |
Q |
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| T |
8701623 |
aaaagactcattagtcattaacgtatagtttaaa-tttagtacaaaagaagtatatagtttaaacttctaatacat |
8701549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 8701749 - 8701659
Alignment:
| Q |
13 |
aaaatacaaacaccatactaaataatatatattaaatttgaaaacagtgaacaa-tgtgtatttctctgatttttcacttaaaaacacatt |
102 |
Q |
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| T |
8701749 |
aaaacacaaacaacatactaaataatatatactaaacttgaaaacagggaacaaatgtgtatttctctgatttttcacttaaaaactcatt |
8701659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 25944345 - 25944400
Alignment:
| Q |
195 |
tataaagaaaatggaattagatgaatgaagaaagaagaaataaaaagactatatga |
250 |
Q |
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| T |
25944345 |
tataaagaaaatggaattagatgaatgaagaaagaagaaataaaaaaactatatga |
25944400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 22630435 - 22630490
Alignment:
| Q |
195 |
tataaagaaaatggaattagatgaatgaagaaagaagaaataaaaagactatatga |
250 |
Q |
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| T |
22630435 |
tataaagaaaatggaattaaatgaatgaaaaaagaagaaataaaaatattatatga |
22630490 |
T |
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