View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_60 (Length: 240)
Name: NF3103_low_60
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_60 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 35901313 - 35901533
Alignment:
| Q |
20 |
gtgtgctgtttggataagggtaggatgaatgcctattcttgttgtgtactaaataaaatgaatgtcattttgttgaaactttcctttgataaagtttaat |
119 |
Q |
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| T |
35901313 |
gtgtgctgtttggataagggtaggatgaatgcctattcttgttgtgtaccaaataaaatgaatgtcattttgttgaaactttcctttgataaagtttaat |
35901412 |
T |
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| Q |
120 |
tgtgttttcttaagctttcatgtttggtagtatctgtagggaaatgtaatcgtttatatgctattaagttttttggacagtagaaaactagttcatctat |
219 |
Q |
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| T |
35901413 |
tgtgttttcttaagctttcatgtttggtagtatctgtagggaaatgtaatcgtttatatgctattaagttttttggacagtagaaaactagttcatctat |
35901512 |
T |
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| Q |
220 |
tataatattgacacctcacac |
240 |
Q |
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| T |
35901513 |
tataatattgacacctcacac |
35901533 |
T |
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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 8347941 - 8348108
Alignment:
| Q |
16 |
atcagtgtgctgtttggataagggtaggatgaatgcctattcttgttgtgtactaaataaaatgaatgtcattttgttgaaactttcctttgataaagtt |
115 |
Q |
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| T |
8347941 |
atcagtgtgccgtttggttatgggtaggatgaatgcctattctgggtgtgtacgaaataaaatgaattacattttgttaaaactttcttgtaataaagtt |
8348040 |
T |
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| Q |
116 |
taattgtgttttcttaagctttcatgtttggtagtatctgtagggaaatgtaatcgtttatatgctat |
183 |
Q |
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| T |
8348041 |
tgattgtgttttggtaagctttcatgtttggtagttttggtatgaaaatgtaatcttttatatgctat |
8348108 |
T |
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