View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_62 (Length: 239)
Name: NF3103_low_62
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 43408359 - 43408578
Alignment:
| Q |
1 |
tgcacctgtttctgtgaatccaaacatgaacgtccatgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatggatctctt |
100 |
Q |
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| T |
43408359 |
tgcacctgtttctgtgaatccaaacatgaacgttcatgttcgtttctttagaagccatgactatccgcgtcatcagcagcaacagcaatatggatctctt |
43408458 |
T |
|
| Q |
101 |
ctagcacttccagtttttgagagaggaagtgggacatgccttggtgttattgagtttgttatctccaatcaaaccctcatcaattaccgtccacaacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408459 |
ctagcacttccagtttttgagagaggaagtgggacatgccttggtgttattgagtttgttatctccaatcaaaccctcatcaattaccgtccacaacttg |
43408558 |
T |
|
| Q |
201 |
atcatctctctaatgctctt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43408559 |
atcatctctctaatgctctt |
43408578 |
T |
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