View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_67 (Length: 235)
Name: NF3103_low_67
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 17461837 - 17462058
Alignment:
| Q |
1 |
tactcattttcttttctcatgcaagcattccataaaatggatacttgtaaaacagttacgagtttgaattccaattgaatatttgaatacagttacgagt |
100 |
Q |
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| T |
17461837 |
tactcattttcttttctcatgcaagcattccataaaatggatacttgtaaaacagttacgagtttgaattccaattgaatattttaatacagttacgagt |
17461936 |
T |
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| Q |
101 |
ttgctataatgcatagttcacgctgaatttgcaatttaactaaagtgtatcgactttgcaagctgagacatcttatttcattgtttcaaaacaacaattg |
200 |
Q |
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| T |
17461937 |
ttgatataatgcatagttcacgctgaatttgcagtttaactaaaatgtatcgactttgcaagctgagacatcttatttcattgtttcaaaacaacaattg |
17462036 |
T |
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| Q |
201 |
taatatttactaactcaaactg |
222 |
Q |
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| T |
17462037 |
taatatttactaactcaaactg |
17462058 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 774853 - 774800
Alignment:
| Q |
1 |
tactcattttcttttctcatgcaagcattccataaaatggatacttgtaaaaca |
54 |
Q |
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| T |
774853 |
tactctttttcttttttcatgcaagcattccctaaaatggatacttgtaaaaca |
774800 |
T |
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