View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_70 (Length: 232)
Name: NF3103_low_70
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 45520446 - 45520253
Alignment:
| Q |
28 |
gggtttcttcctttcccgttatgggcctttgctcgtaatctacaaagaatattactcttctcacttctcaaattgctaaaaaacatacccccaacaacag |
127 |
Q |
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| T |
45520446 |
gggtttcttcctttcccgttatgggcctttgctcgtaatctacaaagaatattactcttctcacttctcaaattgctaaaaaccatacccccaacaacag |
45520347 |
T |
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| Q |
128 |
ttaagtat---tatttcaattactttttatatcagttaaactgatcttaaaattgaaataaatgacaagattaattttcatctgctacaaaatc |
218 |
Q |
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| T |
45520346 |
ttaagtattattatttcaattactttttatatcagttaaactgttcttaaaattgaaataaatgacaagattaattttcatctgctacaaaatc |
45520253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 115
Target Start/End: Original strand, 34846118 - 34846153
Alignment:
| Q |
80 |
tactcttctcacttctcaaattgctaaaaaacatac |
115 |
Q |
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| T |
34846118 |
tactcttctcacttctcaaattgctcaaaaacatac |
34846153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 12136933 - 12136977
Alignment:
| Q |
74 |
gaatattactcttctcacttctcaaattgctaaaaaacatacccc |
118 |
Q |
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| T |
12136933 |
gaatattactcttctcacatttcaaattgctcaaaatcatacccc |
12136977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 9420010 - 9419965
Alignment:
| Q |
73 |
agaatattactcttctcacttctcaaattgctaaaaaacatacccc |
118 |
Q |
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| T |
9420010 |
agaatattactcttctcatttctcaaattgctcaaaaacagacccc |
9419965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 7991996 - 7991959
Alignment:
| Q |
80 |
tactcttctcacttctcaaattgctaaaaaacataccc |
117 |
Q |
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|||||||||||||| |||||||||| |||||||||||| |
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| T |
7991996 |
tactcttctcacttttcaaattgctcaaaaacataccc |
7991959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 28614129 - 28614085
Alignment:
| Q |
72 |
aagaatattactcttctcacttctcaaattgctaaaaaacatacc |
116 |
Q |
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||||||||||||||| | ||||||||||||||| ||||| ||||| |
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| T |
28614129 |
aagaatattactcttataacttctcaaattgctcaaaaatatacc |
28614085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 9250726 - 9250690
Alignment:
| Q |
78 |
attactcttctcacttctcaaattgctaaaaaacata |
114 |
Q |
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| T |
9250726 |
attactcttctcacttctcaaattgctcaaaaacata |
9250690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 26188644 - 26188602
Alignment:
| Q |
74 |
gaatattactcttctcacttctcaaattgctaaaaaacatacc |
116 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||| |
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| T |
26188644 |
gaatattactcttcccacttctcaaattgctccaaaacatacc |
26188602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 38164299 - 38164257
Alignment:
| Q |
73 |
agaatattactcttctcacttctcaaattgctaaaaaacatac |
115 |
Q |
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| T |
38164299 |
agaatattactcttctcacttcttaaattgcacaaaaacatac |
38164257 |
T |
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