View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_low_71 (Length: 230)

Name: NF3103_low_71
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_low_71
NF3103_low_71
[»] chr4 (3 HSPs)
chr4 (11-93)||(1560212-1560294)
chr4 (11-83)||(1561237-1561309)
chr4 (14-84)||(42856444-42856514)
[»] chr8 (3 HSPs)
chr8 (11-93)||(2377072-2377154)
chr8 (11-84)||(38119881-38119954)
chr8 (11-84)||(2380181-2380254)
[»] chr7 (1 HSPs)
chr7 (15-84)||(33329414-33329483)
[»] chr5 (2 HSPs)
chr5 (11-83)||(8284799-8284871)
chr5 (11-51)||(35237456-35237496)
[»] chr2 (1 HSPs)
chr2 (58-99)||(26273149-26273189)
[»] chr1 (1 HSPs)
chr1 (11-83)||(13324513-13324584)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 1560212 - 1560294
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaacccaggaaaa 93  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1560212 catcatcaaacccagcaacattcatcatcttcatcaataaatccagtaacattcatcaccttcatcatcaaaacccaggaaaa 1560294  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 1561309 - 1561237
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaa 83  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  1561309 catcatcatacccagcaacatttatcatcttcatcaataaatccagcaacattcatcaccttcatcatcaaaa 1561237  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 42856514 - 42856444
Alignment:
Q  14 catcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaac 84  Q
    ||||||||||| |||||||||||||  ||||||||||| |||  || ||||||| | || |||||||||||    
T  42856514 catcaaacccaacaacattcatcattttcatcaataaacccaaaaaaattcatcacattaatcatcaaaac 42856444  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 2377072 - 2377154
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaacccaggaaaa 93  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  2377072 catcatcaaacccagcaacattcatcatcttcatcaataaatccagcaacatttatcaccttcatcatcaaaatccaggaaaa 2377154  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 38119881 - 38119954
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaac 84  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  38119881 catcatcaaacccaacaacattcatcatcttcatcaataaacccagcaacattcatcaccttcatcatcaaaac 38119954  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 2380254 - 2380181
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaac 84  Q
    |||||||||| ||| |||||||||||||| ||||||||| | | || || ||||||| ||||||| ||||||||    
T  2380254 catcatcaaatccaacaacattcatcatcttcatcaatatacctagaaaaattcatcaccttcattatcaaaac 2380181  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 33329483 - 33329414
Alignment:
Q  15 atcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaac 84  Q
    ||||||||||||||||||||||||  |||||||||||||||  || ||||||| | ||||||||||||||    
T  33329483 atcaaacccagcaacattcatcattttcatcaataaatccaaaaaaattcatcacattcatcatcaaaac 33329414  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 8284871 - 8284799
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaa 83  Q
    |||||||||||||| |||  ||| ||||| |||||||||||| |||||||||||||| |||||||||| ||||    
T  8284871 catcatcaaacccaacaatgttcgtcatcttcatcaataaatgcagcaacattcatcaccttcatcataaaaa 8284799  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 35237456 - 35237496
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaa 51  Q
    |||||||||| |||||||||||||||||| |||| ||||||    
T  35237456 catcatcaaatccagcaacattcatcatcttcattaataaa 35237496  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 26273189 - 26273149
Alignment:
Q  58 aacattcatctccttcatcatcaaaacccaggaaaattcatc 99  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  26273189 aacattcatccccttcatcatc-aaacccaggaaaattcatc 26273149  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 13324513 - 13324584
Alignment:
Q  11 catcatcaaacccagcaacattcatcatcgtcatcaataaatccagcaacattcatctccttcatcatcaaaa 83  Q
    ||||||||||||||  || |||||||||| ||||| ||||| |||  || ||||||| |||||||||||||||    
T  13324513 catcatcaaacccataaa-attcatcatcttcatccataaacccataaaaattcatcaccttcatcatcaaaa 13324584  T

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