View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3103_low_73 (Length: 228)
Name: NF3103_low_73
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3103_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15473508 - 15473729
Alignment:
| Q |
1 |
cataaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15473508 |
cataaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaac |
15473607 |
T |
|
| Q |
101 |
tggttaatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcacttctttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15473608 |
tggttaatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcacttctttcac |
15473707 |
T |
|
| Q |
201 |
tttccatcacaaccttcaaact |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
15473708 |
tttccatcacaaccttcaaact |
15473729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 15465367 - 15465586
Alignment:
| Q |
3 |
taaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaactg |
102 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||| |||||| |||| ||||||||||||||| || |||||||||| |||||| ||||||||||| |
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| T |
15465367 |
taaccaaattcactattattcatggaagaaaatgaccactctagtaaccactcaaatcatttccttttttatttgtgttcatcaaatgatccacaaactc |
15465466 |
T |
|
| Q |
103 |
gttaatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcacttctttcactt |
202 |
Q |
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|| |||||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15465467 |
gtcaatatttttattagagctacctcgttcagaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcacttctttcactt |
15465566 |
T |
|
| Q |
203 |
tccatcacaaccttcaaact |
222 |
Q |
| |
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|||||||||||||||||||| |
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| T |
15465567 |
tccatcacaaccttcaaact |
15465586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 15460169 - 15460383
Alignment:
| Q |
7 |
caaattcactataattcatggatgaaaa-tgactactctaataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaactggtt |
105 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||| |||||| |||| ||||||||||||||||||| |||||||||| |||||| ||||||||||| || |
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| T |
15460169 |
caaattcactattattcatggataaaaaatgaccactctagtaaccactcaaatcatttcccttcttatttgtgttcatcaaatgatccacaaactcgtc |
15460268 |
T |
|
| Q |
106 |
aatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcacttctttcactttcc |
205 |
Q |
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||||||||||| | | ||| || |||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
15460269 |
aatattcttataaaaactatctgtttcacaaacaacatccctaaccaacttctttcattcactagaattccttctaatcacttcacttctttcaccttcc |
15460368 |
T |
|
| Q |
206 |
atcacaaccttcaaa |
220 |
Q |
| |
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||||||||||||||| |
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| T |
15460369 |
atcacaaccttcaaa |
15460383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 15463598 - 15463820
Alignment:
| Q |
3 |
taaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttcccttcatatttgtgtttgtcaaataatccacaaactg |
102 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| || |||||| |||| ||||| |||||||||||| |||| | ||| |||||| |||||||| || |
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| T |
15463598 |
taacaaaattcactattattcatggatgaaaattaccactctagtaaccactcatttcatttcccttcttattagggttcatcaaatgatccacaatctc |
15463697 |
T |
|
| Q |
103 |
gttaatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttcc---attcactagcattccttctaatcacttcacttctttca |
199 |
Q |
| |
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|| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||| |
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| T |
15463698 |
gtcaatattcttatcagaactacctccttcagaaacaacatccctagccaacttctttcaatattcactagtattccttctaatcacttcacttctttca |
15463797 |
T |
|
| Q |
200 |
ctttccatcacaaccttcaaact |
222 |
Q |
| |
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| |||||||||||| |||||||| |
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|
| T |
15463798 |
ccttccatcacaactttcaaact |
15463820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 15427255 - 15427372
Alignment:
| Q |
3 |
taaccaaattcactataattcatggatgaaaatgactactctaataactactcaaatcatttccc-ttcatatttgtgtttgtcaaataatccacaaact |
101 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||| |
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|
| T |
15427255 |
taaccaaatttactattattcatggatgaaaatgaccactctaa-aacccctcaaatcatttccctttcttatttgtgttcatcaaatgatccacaaact |
15427353 |
T |
|
| Q |
102 |
ggttaatattcttatcaga |
120 |
Q |
| |
|
|| ||||||||||||||| |
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|
| T |
15427354 |
cgtgaatattcttatcaga |
15427372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 15460635 - 15460722
Alignment:
| Q |
106 |
aatattcttatcagagctacctccttcacaaacagcatccctagccaacttcttccattcactagcattccttctaatcacttcactt |
193 |
Q |
| |
|
||||||||||||| | ||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
15460635 |
aatattcttatcaaaactacctctttcagaaacaacatccctagccaacttcttccattcactagcattatttcttatcacttcactt |
15460722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 15462835 - 15462869
Alignment:
| Q |
188 |
tcacttctttcactttccatcacaaccttcaaact |
222 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| |
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| T |
15462835 |
tcacttctttcaccttccatcacaaccttcaaact |
15462869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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