View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3103_low_9 (Length: 593)

Name: NF3103_low_9
Description: NF3103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3103_low_9
NF3103_low_9
[»] chr6 (17 HSPs)
chr6 (1-385)||(13166605-13166991)
chr6 (503-578)||(13166317-13166392)
chr6 (281-498)||(10740640-10740855)
chr6 (417-499)||(13166503-13166585)
chr6 (396-498)||(18792784-18792885)
chr6 (401-498)||(22868530-22868628)
chr6 (396-498)||(33423916-33424019)
chr6 (269-338)||(9401822-9401891)
chr6 (432-498)||(18984566-18984632)
chr6 (450-498)||(10741840-10741888)
chr6 (450-494)||(9365101-9365145)
chr6 (463-498)||(9290661-9290696)
chr6 (455-494)||(28063007-28063046)
chr6 (393-431)||(9363131-9363169)
chr6 (450-491)||(2979663-2979704)
chr6 (455-492)||(28064662-28064699)
chr6 (434-498)||(21862758-21862822)
[»] chr3 (6 HSPs)
chr3 (395-498)||(18088073-18088176)
chr3 (434-498)||(42531358-42531422)
chr3 (393-495)||(30057157-30057260)
chr3 (435-494)||(814364-814423)
chr3 (445-498)||(42530658-42530710)
chr3 (461-498)||(46691454-46691491)
[»] chr2 (7 HSPs)
chr2 (306-498)||(8985643-8985834)
chr2 (401-498)||(8986996-8987092)
chr2 (271-325)||(30385434-30385488)
chr2 (432-498)||(32291224-32291290)
chr2 (396-430)||(29408982-29409016)
chr2 (440-494)||(42633691-42633745)
chr2 (441-494)||(42631574-42631627)
[»] scaffold0511 (1 HSPs)
scaffold0511 (396-498)||(11256-11357)
[»] chr1 (6 HSPs)
chr1 (396-498)||(28665048-28665149)
chr1 (396-498)||(9168382-9168485)
chr1 (436-498)||(15629325-15629389)
chr1 (400-498)||(6696084-6696181)
chr1 (432-498)||(15630120-15630188)
chr1 (401-495)||(30435678-30435767)
[»] chr4 (9 HSPs)
chr4 (393-498)||(16543429-16543535)
chr4 (396-498)||(16871720-16871821)
chr4 (447-498)||(37945553-37945604)
chr4 (447-498)||(54146682-54146733)
chr4 (268-341)||(24224762-24224836)
chr4 (432-494)||(24226122-24226184)
chr4 (294-385)||(37928129-37928220)
chr4 (447-498)||(54148343-54148393)
chr4 (437-477)||(25186978-25187018)
[»] chr7 (11 HSPs)
chr7 (306-498)||(46964269-46964460)
chr7 (396-498)||(6840546-6840648)
chr7 (400-498)||(46963009-46963106)
chr7 (437-498)||(2628224-2628285)
chr7 (280-339)||(17927761-17927820)
chr7 (436-498)||(15614230-15614292)
chr7 (450-498)||(26403516-26403564)
chr7 (427-494)||(5763704-5763771)
chr7 (262-319)||(21812725-21812782)
chr7 (399-494)||(39349344-39349440)
chr7 (438-498)||(44337416-44337476)
[»] chr8 (5 HSPs)
chr8 (396-494)||(43516198-43516295)
chr8 (432-503)||(43414163-43414234)
chr8 (393-459)||(14699348-14699415)
chr8 (438-498)||(20241094-20241154)
chr8 (438-498)||(20251913-20251973)
[»] chr5 (4 HSPs)
chr5 (393-498)||(24137667-24137773)
chr5 (396-498)||(6643432-6643533)
chr5 (402-498)||(11343870-11343967)
chr5 (304-384)||(11336178-11336258)


Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-172; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 13166991 - 13166605
Alignment:
Q  1 cacagaatataagcaaaaacccaactgccggttgcatagattataacccatcaaagcnnnnnnntaaacaaagtgaactaatctttcaagtaacaaaagc 100  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||| |||||||||||    
T  13166991 cacaaaatataagcaaaaacccagctgccggttgcatagattataacccatcaaagcaaaaaaataaacaaagagaactaatctttcatgtaacaaaagc 13166892  T
Q  101 gacaca--aacaaataccgaaacttgatcaatagccacaaaatacacaatagccacaaagctaaaaacacaaaacttgaccaataccgaagctgtaattt 198  Q
    || |||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||    
T  13166891 gatacataaacaaataccgaaacttgatcaataaccacaaaatacacaatagccacaaagcacaaaacacaaaacttgaacaataccgaagctgtgattt 13166792  T
Q  199 ctacttaggacacacaaaacactgaagccacaaagacacttccaaacctgaccaacgaaaatcccaaaagaccaacactataaattaaaccaaatcaatc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13166791 ctacttaggacacacaaaacactgaagccacaaagacacttccaaacctgaccaatgaaaatcccaaaagaccaacactataaattaaaccaaatcaatc 13166692  T
Q  299 acacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgtt 385  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13166691 acacaaaattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgtt 13166605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 503 - 578
Target Start/End: Complemental strand, 13166392 - 13166317
Alignment:
Q  503 attgatggatgagaatataatatatgaaacaattttaacgtcaaacaacaattttcttgtttcacgtgattaaatc 578  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13166392 attgatggataagaatataatatatgaaacaattttaacgtcaaacaacaattttcttgtttcacgtgattaaatc 13166317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 281 - 498
Target Start/End: Complemental strand, 10740855 - 10740640
Alignment:
Q  281 aattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgatacc 380  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||  ||||||||||   || ||||| || ||||||||| ||||||||||||||    
T  10740855 aattaaaccaaatcaatcacacaacattcccaaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgatacc 10740756  T
Q  381 atgttnnnnnnncaaatacaaaatagagaaagagagaataggaacaacaa-tacggctagggttt-tataaaatatcaatagcttaacattacaaaaggt 478  Q
    |||||       |  |||||||    |||||||||||||| ||| | |||    |||||||||||  ||| |||||||||| ||||| ||||||||| ||    
T  10740755 atgttaacaaaactcatacaaa----agaaagagagaataagaatagcaacggaggctagggtttcaatagaatatcaataacttaatattacaaaatgt 10740660  T
Q  479 tatgagagaatatataataa 498  Q
    ||||||||||||||||||||    
T  10740659 tatgagagaatatataataa 10740640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 417 - 499
Target Start/End: Complemental strand, 13166585 - 13166503
Alignment:
Q  417 aataggaacaacaata-cggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataac 499  Q
    |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  13166585 aataggaacaacaataacggctagggtttcataaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataac 13166503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 18792784 - 18792885
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaa-tacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||| |    
T  18792784 atacaaaatagagaaagaga--ataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatataca 18792881  T
Q  495 ataa 498  Q
    ||||    
T  18792882 ataa 18792885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 401 - 498
Target Start/End: Complemental strand, 22868628 - 22868530
Alignment:
Q  401 aaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||| ||| ||||||||||||||||  | ||||||||||| ||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  22868628 aaatagagagagaaagaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataa 22868530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 33423916 - 33424019
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||||||||||||||||||||||    ||||| ||  |||||||||||||  || |||| |||||||| ||||||||||| ||||||| |||||||||||    
T  33423916 atacaaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggttatgggagaatatata 33424015  T
Q  495 ataa 498  Q
    ||||    
T  33424016 ataa 33424019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 338
Target Start/End: Complemental strand, 9401891 - 9401822
Alignment:
Q  269 accaacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaag 338  Q
    ||||| |||| |||| |||||||||||||||||||| |||||||||||||||||||| ||| | ||||||    
T  9401891 accaaaactaaaaatcaaaccaaatcaatcacacaatattcccaaatttttgggaactcaacaacggaag 9401822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 498
Target Start/End: Complemental strand, 18984632 - 18984566
Alignment:
Q  432 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||||| |||||||| ||||||| |  |||||| ||||||||| ||||||||||||||||    
T  18984632 acggctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataa 18984566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 10741888 - 10741840
Alignment:
Q  450 aatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  10741888 aatatcaattgcttaatattacaaaatgttatgagagaatatataataa 10741840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 494
Target Start/End: Original strand, 9365101 - 9365145
Alignment:
Q  450 aatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||    
T  9365101 aatatcaataacttaacattacaaaaggttacaagagaatatata 9365145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 498
Target Start/End: Original strand, 9290661 - 9290696
Alignment:
Q  463 taacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9290661 taacattacaaaaggttataagagaatatataataa 9290696  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 494
Target Start/End: Original strand, 28063007 - 28063046
Alignment:
Q  455 caatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  28063007 caatagcttaacattacaaaaggttactagagaatatata 28063046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 431
Target Start/End: Original strand, 9363131 - 9363169
Alignment:
Q  393 caaatacaaaatagagaaagagagaataggaacaacaat 431  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  9363131 caaatacaaaatcgtgaaagagagaataggaacaacaat 9363169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 2979704 - 2979663
Alignment:
Q  450 aatatcaatagcttaacattacaaaaggttatgagagaatat 491  Q
    ||||||||||||||||||||||||||| |||  |||||||||    
T  2979704 aatatcaatagcttaacattacaaaagattacaagagaatat 2979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 28064662 - 28064699
Alignment:
Q  455 caatagcttaacattacaaaaggttatgagagaatata 492  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  28064662 caatagcttaacattacaaaaggttactagagaatata 28064699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 21862822 - 21862758
Alignment:
Q  434 ggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||| ||| |||| |||| |||||| ||||||||  ||||  ||||||||||||||||    
T  21862822 ggctagggtttcatagaataacaattgcttaatattacaaagagttactagagaatatataataa 21862758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 395 - 498
Target Start/End: Original strand, 18088073 - 18088176
Alignment:
Q  395 aatacaaaatagagaaagagagaataggaacaacaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||| ||| ||| ||||||||||   ||||||||| ||||||||||||||||||    
T  18088073 aatacaaaatagagaaagagagaatagggaaaacaaaacggctagggtttcatagaatgtcaatagcttgctattacaaaatgttatgagagaatatata 18088172  T
Q  495 ataa 498  Q
    ||||    
T  18088173 ataa 18088176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 42531422 - 42531358
Alignment:
Q  434 ggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  42531422 ggctagggtttcatacaatatcaatggcttaacattacaaaaggttataagagaatatataataa 42531358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 393 - 495
Target Start/End: Complemental strand, 30057260 - 30057157
Alignment:
Q  393 caaatacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatat 491  Q
    ||||||||||||||||||  |||||||| |||||||||  ||| ||||| ||| | | || |||||||||||||||||||||||| |||| |||||||||    
T  30057260 caaatacaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattataagagaatat 30057161  T
Q  492 ataa 495  Q
    ||||    
T  30057160 ataa 30057157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 435 - 494
Target Start/End: Original strand, 814364 - 814423
Alignment:
Q  435 gctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||| |||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||    
T  814364 gctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatata 814423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 445 - 498
Target Start/End: Complemental strand, 42530710 - 42530658
Alignment:
Q  445 tataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  42530710 tatataatatcaatggcttaacattacaaa-ggttataagagaatatataataa 42530658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 498
Target Start/End: Original strand, 46691454 - 46691491
Alignment:
Q  461 cttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  46691454 cttaacattacaaaaggttataagagaatatataataa 46691491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 306 - 498
Target Start/End: Complemental strand, 8985834 - 8985643
Alignment:
Q  306 attcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgttnnnnnnncaaatacaaaata 405  Q
    ||||||||| |||||||||| ||| |||||||||||  | ||| ||| || || |||||| | |||||||||||||||||       || ||| |||||     
T  8985834 attcccaaacttttgggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatataaaatg 8985735  T
Q  406 gagaaagagagaataggaacaacaatacggctagggtttta-taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||||||||||||||||||||||   ||||||| | ||| | || | || ||||||||||||||||||||||||||| ||||||||||||||||    
T  8985734 gagaaagagagaataggaacaac--gacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataa 8985643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 401 - 498
Target Start/End: Complemental strand, 8987092 - 8986996
Alignment:
Q  401 aaatagagaaagagagaataggaacaacaatacggctagggttttataaaa-tatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||| ||||||||||||||||||||||| |  |||||| | ||| || | | || ||||||||||||||||||||||||||| ||||||||||||||||    
T  8987092 aaatggagaaagagagaataggaacaacga--cggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataa 8986996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 30385488 - 30385434
Alignment:
Q  271 caacactataaattaaaccaaatcaatcacacaacattcccaaatttttgggaac 325  Q
    |||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||    
T  30385488 caacactacaaattaaaccaagtcaatcacacaacattgccaaaattttgggaac 30385434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 498
Target Start/End: Complemental strand, 32291290 - 32291224
Alignment:
Q  432 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||| ||||| ||| ||||||||| ||||  |||||||||||||||| ||||||||||||||||    
T  32291290 acggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataa 32291224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 430
Target Start/End: Original strand, 29408982 - 29409016
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaa 430  Q
    ||||||||||||||||||||||||| |||||||||    
T  29408982 atacaaaatagagaaagagagaataagaacaacaa 29409016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 494
Target Start/End: Original strand, 42633691 - 42633745
Alignment:
Q  440 ggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||| ||| ||||||||| ||||||||||||||||| |||  ||||||||||||    
T  42633691 ggtttcatagaatatcaattgcttaacattacaaaagattactagagaatatata 42633745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 494
Target Start/End: Original strand, 42631574 - 42631627
Alignment:
Q  441 gttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||| ||| ||||||||| | ||||||||| |||||||||| ||||||||||||    
T  42631574 gtttcatagaatatcaattgtttaacattataaaaggttattagagaatatata 42631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 11357 - 11256
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaa-tacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||| |    
T  11357 atacaaaatagagaaagaga--ataaaaacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatataca 11260  T
Q  495 ataa 498  Q
    ||||    
T  11259 ataa 11256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 28665149 - 28665048
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaatacggctagggttttataa-aatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||||| ||||||||||||||||||||||| |  |||||||||||| || | |||| ||||||||||| ||||||||| ||||||||||||||||||    
T  28665149 atacaaaatggagaaagagagaataggaacaacga--cggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagagaatatata 28665052  T
Q  495 ataa 498  Q
    ||||    
T  28665051 ataa 28665048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 9168382 - 9168485
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||||||||||||||||||||| || ||||||  ||||||||||||| |||||||||||||| ||| | || |||||| ||||| ||||||||||||    
T  9168382 atacaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatata 9168481  T
Q  495 ataa 498  Q
    ||||    
T  9168482 ataa 9168485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 15629325 - 15629389
Alignment:
Q  436 ctagggttttataaaatat--caatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||| |||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||    
T  15629325 ctagggtttcataaaatatttcaatagcttaatattacaaaaggttataagagaatatataataa 15629389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 400 - 498
Target Start/End: Complemental strand, 6696181 - 6696084
Alignment:
Q  400 aaaatagagaaagagagaataggaacaacaatacggctagggttttataaaa-tatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||| ||||||||||||||||||||||| |  |||||| | ||| || | | || ||||||||||||||||||||||||||| ||||||||| ||||||    
T  6696181 aaaatggagaaagagagaataggaacaacga--cggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatttaataa 6696084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 15630120 - 15630188
Alignment:
Q  432 acggctagggttttataaaatat--caatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||||| |||||||||  ||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  15630120 acggctagggtttcataaaatatttcaataacttaatattccaaaaggttataagagaatatataataa 15630188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 495
Target Start/End: Complemental strand, 30435767 - 30435678
Alignment:
Q  401 aaatagagaaagagagaataggaacaacaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataa 495  Q
    |||||||||||||||||||||||     || ||||||||||||| ||| |||  | ||||||| | |||||||||||||| ||||  ||||||||    
T  30435767 aaatagagaaagagagaatagga-----aaaacggctagggtttaatagaattacgatagcttgatattacaaaaggttacgagaatatatataa 30435678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 16543535 - 16543429
Alignment:
Q  393 caaatacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatat 491  Q
    |||||||||| |||||||||||| |||| |||||||||  ||||||||||||| ||| |||||||||| ||||||||| ||||||||||   ||||||||    
T  16543535 caaatacaaattagagaaagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatat 16543436  T
Q  492 ataataa 498  Q
    |||||||    
T  16543435 ataataa 16543429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 16871821 - 16871720
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaatacggctagggttttataaaa-tatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||||| ||||||||||||| | ||||||| |  |||||||||||| || | | || ||||||||||||||||||||||||||| ||| ||||||||    
T  16871821 atacaaaatggagaaagagagaacaagaacaacga--cggctagggtttcattagactaacaatagcttaacattacaaaaggttataagataatatata 16871724  T
Q  495 ataa 498  Q
    ||||    
T  16871723 ataa 16871720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 498
Target Start/End: Complemental strand, 37945604 - 37945553
Alignment:
Q  447 taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||||    
T  37945604 taaaatatcaattgattaacattacaaaaggttataagagaatatataataa 37945553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 447 - 498
Target Start/End: Complemental strand, 54146733 - 54146682
Alignment:
Q  447 taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  54146733 taaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataa 54146682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 24224836 - 24224762
Alignment:
Q  268 gaccaacactataaattaaaccaaatcaatcacacaacattcc-caaatttttgggaacacaaaagcggaagcga 341  Q
    |||||||| || |||||||||||||||||||||||||||||||  ||| |||||||||| ||| |||| ||||||    
T  24224836 gaccaacattaaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcgaaagcga 24224762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 432 - 494
Target Start/End: Complemental strand, 24226184 - 24226122
Alignment:
Q  432 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||| ||| |||||||| |||| |||||| |||||||||||||||||||| ||||||||||||    
T  24226184 acggatagagttttatagaataccaatagtttaacattacaaaaggttattagagaatatata 24226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 385
Target Start/End: Complemental strand, 37928220 - 37928129
Alignment:
Q  294 caatcacacaacattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgtt 385  Q
    |||||||||| || |||||||||||||||||| |||  ||| ||||||  ||| ||||  |||||||||||  | ||||| |||||||||||    
T  37928220 caatcacacatcaatcccaaatttttgggaactcaacggcgaaagcgacaaatgattctaggcggatcaaaacaagctctcgataccatgtt 37928129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 498
Target Start/End: Complemental strand, 54148393 - 54148343
Alignment:
Q  447 taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||||||||||||| | |||||| | |||||||||||||||||||||    
T  54148393 taaaatatcaatagcttaataatacaaatg-ttatgagagaatatataataa 54148343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 25186978 - 25187018
Alignment:
Q  437 tagggttttataaaatatcaatagcttaacattacaaaagg 477  Q
    |||||||| |||||||||||| ||||||||||| |||||||    
T  25186978 tagggtttcataaaatatcaacagcttaacattgcaaaagg 25187018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 306 - 498
Target Start/End: Original strand, 46964269 - 46964460
Alignment:
Q  306 attcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgttnnnnnnncaaatacaaaata 405  Q
    ||||||||| |||||||||| ||| |||||||||||  | ||| ||| || || |||||| | |||||||||||||||||       || ||| |||||     
T  46964269 attcccaaacttttgggaactcaacagcggaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatataaaatg 46964368  T
Q  406 gagaaagagagaataggaacaacaatacggctagggtttta-taaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||||||||||||||||||||||   ||||||| | ||| | || | || ||||||||||| ||||||||| ||||| ||||||||||||||||    
T  46964369 gagaaagagagaataggaacaac--gacggctacgatttcattagactaacaatagcttaatattacaaaaagttataagagaatatataataa 46964460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 396 - 498
Target Start/End: Original strand, 6840546 - 6840648
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||||||||||||||| ||||||||  || |||||  |||| || ||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  6840546 atacaaaatagagaaacagagaatat-aagaacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggttataaaagaatatata 6840644  T
Q  495 ataa 498  Q
    ||||    
T  6840645 ataa 6840648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 46963009 - 46963106
Alignment:
Q  400 aaaatagagaaagagagaataggaacaacaatacggctagggttttataa-aatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||| ||||||||||||||||||||||| |  |||||| | ||| || | |||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  46963009 aaaatggagaaagagagaataggaacaacga--cggctacgatttcattataataacaatagcttaacattacaaaaggttataagagaatatctaataa 46963106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 437 - 498
Target Start/End: Original strand, 2628224 - 2628285
Alignment:
Q  437 tagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||||||| ||| ||||||||||| ||||||||||||||  |||||||||||||||||||||    
T  2628224 tagggtttcatataatatcaatagtttaacattacaaaaaattatgagagaatatataataa 2628285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 339
Target Start/End: Original strand, 17927761 - 17927820
Alignment:
Q  280 aaattaaaccaaatcaatcacacaacattcccaaatttttgggaacacaaaagcggaagc 339  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||| ||| |||||||||    
T  17927761 aaattaaaccaaatcaatcacacaacattcccaaacttttgaaaactcaatagcggaagc 17927820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 436 - 498
Target Start/End: Original strand, 15614230 - 15614292
Alignment:
Q  436 ctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||||| ||| |||| ||||||||||| ||||||||||||||| | ||||||||||||||    
T  15614230 ctagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataataa 15614292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 498
Target Start/End: Complemental strand, 26403564 - 26403516
Alignment:
Q  450 aatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||||    
T  26403564 aataacaatagcataacattacaaaaagttataagagaatatataataa 26403516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 494
Target Start/End: Complemental strand, 5763771 - 5763704
Alignment:
Q  427 acaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||| |||||| |||| | |||||||||||||| ||||| ||||||||| ||||  ||||||||||||    
T  5763771 acaaaacggcttgggtgtcataaaatatcaatatcttaatattacaaaatgttacaagagaatatata 5763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 21812782 - 21812725
Alignment:
Q  262 ccaaaagaccaacactataaattaaaccaaatcaatcacacaacattcccaaattttt 319  Q
    ||||||||||||  ||| ||| ||||||||||||| ||| |||||||||||| |||||    
T  21812782 ccaaaagaccaattctagaaactaaaccaaatcaaacacgcaacattcccaacttttt 21812725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 494
Target Start/End: Original strand, 39349344 - 39349440
Alignment:
Q  399 caaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    ||||||| | ||||||||||| |||||||||||   ||| ||||||| ||| |||| || || ||| ||||||||||||||||   |||||||||||    
T  39349344 caaaataaataaagagagaatgggaacaacaatggaggcaagggtttcatagaatagcattaacttgacattacaaaaggttacaggagaatatata 39349440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 44337476 - 44337416
Alignment:
Q  438 agggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||| |||||||| ||||||| |  |||||| ||| ||||| ||||||||||||||||    
T  44337476 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataa 44337416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 396 - 494
Target Start/End: Complemental strand, 43516295 - 43516198
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaatacggctagggttt-tataaaatatcaatagcttaacattacaaaaggttatgagagaatatata 494  Q
    |||||||||||||||| ||||||||||||||  |  |||||||||||||  ||| |||| || ||||||||||||||| |||||||  ||||||||||||    
T  43516295 atacaaaatagagaaacagagaataggaaca--atgacggctagggtttcaatagaataccattagcttaacattacataaggttactagagaatatata 43516198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 43414234 - 43414163
Alignment:
Q  432 acggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataacttta 503  Q
    |||| ||| ||||||||||| | |||||| | || |||||||||||||||||||||||||||||||| ||||    
T  43414234 acggttagagttttataaaagaacaatagttgaatattacaaaaggttatgagagaatatataataaattta 43414163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 459
Target Start/End: Original strand, 14699348 - 14699415
Alignment:
Q  393 caaatacaaaatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaata 459  Q
    ||||||||||||||||||||||||||||||||||| |||    | |||||||||||||||||| ||||    
T  14699348 caaatacaaaatagagaaagagagaataggaacaataatgtaagttagggttttataaaatattaata 14699415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 20241154 - 20241094
Alignment:
Q  438 agggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||| |||||||| ||||||| |  |||||| ||| ||||| ||||||||||||||||    
T  20241154 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataa 20241094  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 20251913 - 20251973
Alignment:
Q  438 agggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataataa 498  Q
    ||||||| |||||||| ||||||| |  |||||| ||| ||||| ||||||||||||||||    
T  20251913 agggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataa 20251973  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 498
Target Start/End: Complemental strand, 24137773 - 24137667
Alignment:
Q  393 caaatacaaaatagagaaagagaga-ataggaacaacaatac-ggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaata 490  Q
    ||||||||||||||||||||||| | | ||||| |||||    ||||||| ||| ||| ||||||||| ||||||||||||| |||||||| ||||||||    
T  24137773 caaatacaaaatagagaaagagaaagagaggaataacaacggaggctagg-tttcatataatatcaattgcttaacattacagaaggttataagagaata 24137675  T
Q  491 tataataa 498  Q
    ||||||||    
T  24137674 tataataa 24137667  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 396 - 498
Target Start/End: Complemental strand, 6643533 - 6643432
Alignment:
Q  396 atacaaaatagagaaagagagaataggaacaacaatacggctagggttttataaaatatcaatagcttaacattacaaaaggttatgagagaatatataa 495  Q
    |||||||||||| || |||||||| | ||||| || | ||||||||||| ||| |||| || ||||||||||||  ||||||||||  ||||||||||||    
T  6643533 atacaaaatagaaaatgagagaatggaaacaataaaatggctagggtttcatagaataaca-tagcttaacattgtaaaaggttatatgagaatatataa 6643435  T
Q  496 taa 498  Q
    |||    
T  6643434 taa 6643432  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 498
Target Start/End: Original strand, 11343870 - 11343967
Alignment:
Q  402 aatagagaaagagagaataggaacaacaat-acggctagggttttataaaatatcaatagcttaacattac-aaaaggttatgagagaatatataataa 498  Q
    ||||||||||||||||| | ||| |||||  ||||||| ||||| |||||| ||||||||||||||||||| |||| ||||| ||||| ||||||||||    
T  11343870 aatagagaaagagagaacatgaataacaaagacggctaaggtttcataaaa-atcaatagcttaacattacaaaaatgttataagagagtatataataa 11343967  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 11336178 - 11336258
Alignment:
Q  304 acattcccaaatttttgggaacacaaaagcggaagcgagtaataattcacggcggatcaaacgatgctcttgataccatgt 384  Q
    ||||||||||| |||||||||| ||| ||| |||||||  | ||||| | |  | ||||||| ||||||||||||||||||    
T  11336178 acattcccaaaattttgggaacccaacagccgaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgt 11336258  T

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