View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3104-Insertion-1 (Length: 850)

Name: NF3104-Insertion-1
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3104-Insertion-1
NF3104-Insertion-1
[»] chr8 (15 HSPs)
chr8 (352-850)||(13811310-13811800)
chr8 (19-340)||(13811842-13812161)
chr8 (352-542)||(12643107-12643297)
chr8 (352-547)||(19382628-19382826)
chr8 (382-542)||(22897852-22898012)
chr8 (100-340)||(12642825-12643065)
chr8 (398-549)||(13700118-13700269)
chr8 (388-542)||(23476849-23477006)
chr8 (398-537)||(9530536-9530675)
chr8 (391-544)||(34723840-34723993)
chr8 (184-320)||(13700377-13700513)
chr8 (704-766)||(3364165-3364230)
chr8 (704-766)||(3391676-3391741)
chr8 (384-422)||(14848443-14848481)
chr8 (721-762)||(3347170-3347211)
[»] chr2 (14 HSPs)
chr2 (101-340)||(26501496-26501735)
chr2 (352-542)||(30848166-30848356)
chr2 (352-546)||(26501260-26501454)
chr2 (352-518)||(13681261-13681427)
chr2 (357-518)||(1902155-1902314)
chr2 (190-340)||(30847974-30848124)
chr2 (382-542)||(20609264-20609432)
chr2 (190-340)||(1901956-1902104)
chr2 (398-518)||(25393353-25393473)
chr2 (391-549)||(44886295-44886453)
chr2 (384-422)||(17102798-17102836)
chr2 (106-212)||(30846456-30846562)
chr2 (384-422)||(32019532-32019570)
chr2 (499-544)||(43870493-43870538)
[»] chr1 (10 HSPs)
chr1 (352-542)||(45600824-45601013)
chr1 (382-534)||(26333616-26333768)
chr1 (382-542)||(38488860-38489020)
chr1 (101-340)||(45600545-45600782)
chr1 (382-542)||(28385102-28385263)
chr1 (388-549)||(17178850-17179012)
chr1 (403-549)||(24083387-24083535)
chr1 (173-320)||(17178605-17178752)
chr1 (384-422)||(17431165-17431203)
chr1 (384-422)||(44002248-44002286)
[»] chr3 (14 HSPs)
chr3 (352-549)||(4479855-4480052)
chr3 (403-549)||(45004201-45004347)
chr3 (382-542)||(16877959-16878119)
chr3 (403-542)||(14485556-14485695)
chr3 (101-340)||(4480094-4480333)
chr3 (380-549)||(42626034-42626203)
chr3 (388-537)||(54561498-54561647)
chr3 (409-543)||(12526576-12526710)
chr3 (391-549)||(8566014-8566172)
chr3 (184-290)||(12526859-12526965)
chr3 (391-471)||(53394835-53394915)
chr3 (185-340)||(54561725-54561879)
chr3 (499-548)||(16739413-16739462)
chr3 (398-471)||(51110539-51110612)
[»] chr7 (21 HSPs)
chr7 (352-542)||(13638448-13638637)
chr7 (402-549)||(29961871-29962018)
chr7 (38-340)||(13638679-13638981)
chr7 (352-503)||(8862319-8862470)
chr7 (382-537)||(42510031-42510186)
chr7 (78-340)||(8862512-8862774)
chr7 (398-542)||(25997751-25997895)
chr7 (145-320)||(29961641-29961816)
chr7 (398-537)||(44675351-44675490)
chr7 (391-549)||(17238655-17238813)
chr7 (183-320)||(41864717-41864854)
chr7 (391-549)||(8118781-8118939)
chr7 (382-459)||(9941891-9941968)
chr7 (380-440)||(17205160-17205220)
chr7 (385-471)||(40063146-40063232)
chr7 (497-549)||(48770218-48770270)
chr7 (384-422)||(6621384-6621422)
chr7 (499-549)||(13014945-13014995)
chr7 (384-422)||(15846938-15846976)
chr7 (384-422)||(15856148-15856186)
chr7 (183-224)||(17205404-17205445)
[»] chr4 (9 HSPs)
chr4 (353-543)||(15543405-15543594)
chr4 (384-543)||(33480385-33480544)
chr4 (196-340)||(15543637-15543781)
chr4 (398-507)||(27009718-27009827)
chr4 (190-313)||(33480162-33480285)
chr4 (499-549)||(13686116-13686166)
chr4 (391-549)||(14264039-14264197)
chr4 (379-427)||(12601889-12601937)
chr4 (499-542)||(54886604-54886647)
[»] chr6 (9 HSPs)
chr6 (385-546)||(6231396-6231557)
chr6 (389-549)||(6695577-6695737)
chr6 (190-340)||(6231171-6231321)
chr6 (398-507)||(30870823-30870932)
chr6 (391-542)||(31029128-31029279)
chr6 (462-537)||(35087841-35087916)
chr6 (433-509)||(30589017-30589093)
chr6 (384-422)||(17812244-17812282)
chr6 (384-422)||(33132305-33132343)
[»] chr5 (7 HSPs)
chr5 (388-543)||(22786026-22786181)
chr5 (388-537)||(38950906-38951053)
chr5 (497-546)||(36045023-36045072)
chr5 (190-337)||(38950678-38950825)
chr5 (499-549)||(2157759-2157809)
chr5 (384-422)||(11123599-11123637)
chr5 (499-549)||(13649556-13649606)
[»] scaffold0198 (1 HSPs)
scaffold0198 (499-543)||(21810-21854)


Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 352 - 850
Target Start/End: Complemental strand, 13811800 - 13811310
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13811800 attgatgagtgttgggtgcaatttttctcctctttcacaaactctagggttgagtttattaggcgacaagcgaatgcggcggctcatgctttagcaagag 13811701  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaagg 551  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  13811700 aagccacttccttagctagtcccgatatttattatgtaatcccacaatgtattgaatctattattataaatgaaatgctataagcatctttccttcaaaa 13811601  T
Q  552 aaaagtaagtttgagcacaccatcttcactcaaaacattaagacattagatatatagatattctcaattatgtgttactactcaacatctactttttcat 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  13811600 aaaagtaagtttgagcacaccatcttcactcaaaacattaagacattagatatatagatattctcaattatatgtcactactcaacatctactttttcat 13811501  T
Q  652 tcaatgtaggaactcacacttgagacattaacatttaacaatattttcccaaattagagtgatcagggattccatttgcactatattttctaatttgtca 751  Q
    |||||||| |||||||||||||| | |       ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  13811500 tcaatgta-gaactcacacttgacata-------ttaacaatattttcccaaattagagtgatcaaggattccatttgtactatattttctaatttgtca 13811409  T
Q  752 atatttgaacaaccacaacatctttgtaatagtgttattaccgttgctccttttcaaggatgtcatcctaagaaatcatatgcacttggttctccacta 850  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13811408 atatttgaacaaccacaacatctttgtaatagtgttattacagttgctccttttcaaggatgtcatccaaagaaatcatatgcacttggttctccacta 13811310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 13812161 - 13811842
Alignment:
Q  19 gccatcacgctacagactggtgtgcagtcccaaaatgcccaatctggtcctgatgtgcagaaatgggtgccacctagcagcaggagattcaaatggaaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  13812161 gccatcacgctacagactggtgtgcagtcccaaaatgcccaatctggtcctgatgtgcagcaatgggtgccacctagcagcgggagattcaaatgcaaca 13812062  T
Q  119 tcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagctaaagtgctgcaatatga 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13812061 tcgacgcggctttctcggaaactttccaacggac--gtattggagtgtgtctcagggatgatcatggaacgtttgttttaactaaagtgctgcaatatga 13811964  T
Q  219 tcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaatatggattttgagctagat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13811963 tcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaatgtggattttgagctagat 13811864  T
Q  319 tctaagattacgagggatgctt 340  Q
    ||||||||||||||||||||||    
T  13811863 tctaagattacgagggatgctt 13811842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 352 - 542
Target Start/End: Original strand, 12643107 - 12643297
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| |||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12643107 attgatgagtgtcgagagcaatttttctcttccttcacaaactctagggtcgagtttatgaggcgacaagcgaatacggcggctcatgctttagcaagag 12643206  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| ||||||||||| | ||| ||||||||||| |||| |||||||| |||||||||||||||| || ||||||||||||||||||||    
T  12643207 aagccatttccttagctaatcccactatttattatgcaatctcacaatgtgttgaatctattattattaatgaaatgctataagcatcttt 12643297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 352 - 547
Target Start/End: Complemental strand, 19382826 - 19382628
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||| ||| ||||||||||   || ||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  19382826 attgatgagtgttgagagcaatttttccattccttcacaaactctagggttgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagag 19382727  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctatta---ttataaaagaaatgctataagcatctttccttc 547  Q
    ||| || ||||||||||||| |||  |||||||||| ||||||||||||||||||||||||||   |||| || |||||||||||||||| ||| ||||    
T  19382726 aagtcatttccttagctagtcccacaatttattatgcaatcccacaatgtattgaatctattattattattaatgaaatgctataagcatattttcttc 19382628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 382 - 542
Target Start/End: Original strand, 22897852 - 22898012
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatattt 481  Q
    ||||| |||||||| |||||||||||||   |||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  22897852 tcttttacaaactctagggtcgagtttacccggcgacaagcgaatgcggcagctcatgccttagcacgagaagccacttccttagctagttcccatattt 22897951  T
Q  482 attatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| |||||| |  ||||||||| |||||||||| || ||||||||||||||||||||    
T  22897952 attatgaaatccctctttgtattgaaactattattattaatgaaatgctataagcatcttt 22898012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 100 - 340
Target Start/End: Original strand, 12642825 - 12643065
Alignment:
Q  100 aggagattcaaatggaacatcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttag 199  Q
    ||||| |||||||| || || || ||||||||||| |||   ||||||||||| |||||  || |||||||  ||||||||  |||||| ||||||||||    
T  12642825 aggaggttcaaatgcaatattgatgcggctttctctgaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctggaacttttgttttag 12642924  T
Q  200 ctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaa 299  Q
    |||||||| |||| | |||||||||||||||||||| ||||||||||||  | |||||||| |||| |||||||||||||||||||||||| || |||||    
T  12642925 ctaaagtgatgcattttgatcaagtttatccggtagttgttggcgaagctttgggtctttatcatgtcattcaatggatgcaagacatgcaatttgacaa 12643024  T
Q  300 tatggattttgagctagattctaagattacgagggatgctt 340  Q
     || |||||  |||| |||||||| || || || |||||||    
T  12643025 catagatttcaagcttgattctaaaataaccagagatgctt 12643065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 398 - 549
Target Start/End: Complemental strand, 13700269 - 13700118
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||||||||| |||||| ||||||||||| |||||||||||||| | |  ||||||| ||| |||||||||||| ||| |||||||||||  ||||||||    
T  13700269 gggtcgagttcattaggtgacaagcgaatgcggcggctcatgctctggttagagaagtcacatccttagctagtcccattatttattatgctatcccaca 13700170  T
Q  498 atgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
     ||||||||| |||||||||| || ||||||||||||||||||||| |||||    
T  13700169 ttgtattgaaactattattattaatgaaatgctataagcatctttctttcaa 13700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 388 - 542
Target Start/End: Complemental strand, 23477006 - 23476849
Alignment:
Q  388 acaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatg 487  Q
    ||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||    
T  23477006 acaaactcccgggtagagtttattaggcgacaagcgaatgcggcggctcatgctttagcaagagaagccacttccctagctaatcccattatttattatg 23476907  T
Q  488 taatcccacaatgtattgaatc---tattattataaaagaaatgctataagcatcttt 542  Q
     |||| ||  ||||||| || |   ||||||||| || ||||||||||||||||||||    
T  23476906 caatctcattatgtattcaacctattattattattaatgaaatgctataagcatcttt 23476849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 398 - 537
Target Start/End: Original strand, 9530536 - 9530675
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||| ||||||||||||||||||| |||| ||||||||||| || | ||||||||||  | ||||||||||||| ||| ||||||||||||||||| |      
T  9530536 gggtagagtttattaggcgacaagtgaattcggcggctcatactcttgcaagagaagtaatttccttagctagtcccactatttattatgtaatcctaag 9530635  T
Q  498 atgtattgaatctattattataaaagaaatgctataagca 537  Q
     |||||||||  |||||| || || |||||||||||||||    
T  9530636 ttgtattgaacatattatcattaatgaaatgctataagca 9530675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 544
Target Start/End: Complemental strand, 34723993 - 34723840
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||| ||   ||  |||||| || | |||||||||||||| || |||||||||  |    |||||||||  |    
T  34723993 aactccagggtggagtttgttaggcgacaagccaacgtggttgctcatactcttgcaagagaagccacgtctttagctagtctcgccgtttattatgata 34723894  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatctttcc 544  Q
    | ||  | ||||||||||||||||| || || |||||||| |||||||||||||    
T  34723893 tacccaattgtattgaatctattatgattaatgaaatgctctaagcatctttcc 34723840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 13700513 - 13700377
Alignment:
Q  184 ggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaag 283  Q
    ||||| |||||  ||||||||||| |||||| ||||||||| | ||| ||||| || || |||||  | ||| | || |||||  |||||||||| ||||    
T  13700513 ggaacctttgtgctagctaaagtgatgcaatttgatcaagtctttcccgtagcagtcggtgaagcgttgggtttgtatcatgctcttcaatggatacaag 13700414  T
Q  284 acatgcatttcgacaatatggattttgagctagattc 320  Q
    ||||||| || || ||||| || |||||||| |||||    
T  13700413 acatgcaatttgataatatagactttgagcttgattc 13700377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 766
Target Start/End: Complemental strand, 3364230 - 3364165
Alignment:
Q  704 attagagtgatcagggattccatttgcactatattttct---aatttgtcaatatttgaacaacca 766  Q
    ||||||||  ||| |||||||||||||||||||| ||||   ||||||||||| ||||||||||||    
T  3364230 attagagttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaacca 3364165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 766
Target Start/End: Original strand, 3391676 - 3391741
Alignment:
Q  704 attagagtgatcagggattccatttgcactatattttct---aatttgtcaatatttgaacaacca 766  Q
    ||||||||  ||| |||||||||||||||||||| ||||   ||||||||||| ||||||||||||    
T  3391676 attagagttgtcaaggattccatttgcactatatcttcttccaatttgtcaatctttgaacaacca 3391741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 14848481 - 14848443
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  14848481 tttcacaaactcaagggtagagtttattaggagacaagc 14848443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 721 - 762
Target Start/End: Original strand, 3347170 - 3347211
Alignment:
Q  721 ttccatttgcactatattttctaatttgtcaatatttgaaca 762  Q
    ||||||||||||| || |||||||||||||||| ||||||||    
T  3347170 ttccatttgcactttactttctaatttgtcaatctttgaaca 3347211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 3e-75; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 101 - 340
Target Start/End: Complemental strand, 26501735 - 26501496
Alignment:
Q  101 ggagattcaaatggaacatcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagc 200  Q
    ||||| ||||||  ||| |||||||||||||||| ||||||||||||||||| |||||  |||||||||| |||||| |||||||||| |||||||||||    
T  26501735 ggagactcaaatacaacgtcgacgcggctttctctgaaactttccaacggacaggtatcagagtgtgtcttagggataatcatggaacttttgttttagc 26501636  T
Q  201 taaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaat 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  26501635 taaagtgctgcaatttgatcaagtttatccggtagctgttggcgaggctctaggtctttaccatgccatacaatggatgcaagacatgcaattcgacaat 26501536  T
Q  301 atggattttgagctagattctaagattacgagggatgctt 340  Q
     | || ||  ||||||||||||| || | |||||||||||    
T  26501535 gtagacttcaagctagattctaaaataaagagggatgctt 26501496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 352 - 542
Target Start/End: Original strand, 30848166 - 30848356
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| |||||||||| | |||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  30848166 attgatgagtgtcgagagcaatttttcccttctttcacaaactctacggtcgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagag 30848265  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  30848266 aagccatttccttagctagtcccactatttattatgcaatcccacaatgtattgaatctattattattaatgaaatgctataagcatcttt 30848356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 352 - 546
Target Start/End: Complemental strand, 26501454 - 26501260
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||  ||||||||||| ||||||||||     
T  26501454 attgatgagtgtcgagtgcaatttttctcctctttcacaaactctagggtcgagtttattaggcgacaaatgaatgtggcggctcatggtttagcaagaa 26501355  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttcctt 546  Q
    ||| ||||||||||  |||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||| ||| |||||||    
T  26501354 aagtcacttccttaattagtcccaatatttattatgtaatcgcacaatgtattgaacctattattataaatgaaatgctataaacatatttcctt 26501260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 352 - 518
Target Start/End: Original strand, 13681261 - 13681427
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| |||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||||    
T  13681261 attgatgagtgtcgagagcaatttttctcttccttcacaaactctagggtcaagtttattaggcgacaagcgaatacggcggctcacgccttagcaagag 13681360  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattat 518  Q
    |||||| ||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  13681361 aagccatttccttagctagtcccactatttattatgcaatcccacaatgtattgaatctattattat 13681427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 357 - 518
Target Start/End: Original strand, 1902155 - 1902314
Alignment:
Q  357 tgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagcc 456  Q
    ||||||||||| |||||||| | | || ||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||||| |    
T  1902155 tgagtgtcgagagcaattttcc-cttccttcacaaactctagggtcgagtttattaggcgacaaacgaatatggcagctcatgccttagcaagagaagtc 1902253  T
Q  457 acttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattat 518  Q
    | ||||||| ||||| ||| |||||||||||  ||||||||||||| |||||||||||||||    
T  1902254 atttccttaactagtcccactatttattatg-catcccacaatgtactgaatctattattat 1902314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 190 - 340
Target Start/End: Original strand, 30847974 - 30848124
Alignment:
Q  190 tttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgc 289  Q
    |||||||||||||| ||| |||  | ||||||||||||||||||||||||||| |||||  | |||||||| |||| ||||||||||||| |||||||||    
T  30847974 tttgttttagctaatgtgatgccttttgatcaagtttatccggtagctgttggtgaagctttgggtctttatcatgtcattcaatggatgtaagacatgc 30848073  T
Q  290 atttcgacaatatggattttgagctagattctaagattacgagggatgctt 340  Q
    | |||||||| || ||||||||||| |||||||| || ||||| |||||||    
T  30848074 aattcgacaacatagattttgagcttgattctaaaataacgagagatgctt 30848124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 382 - 542
Target Start/End: Original strand, 20609264 - 20609432
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagt-tc-----ca 475  Q
    ||||||||||||||||| || |||||| || ||| ||||| |||| |||  |||||||||||||||||| |||||||||||||||||||| ||     ||    
T  20609264 tctttcacaaactcaagagttgagtttttt-ggcaacaagagaatgcggtcgctcatgctttagcaagaaaagccacttccttagctagtctcaatctca 20609362  T
Q  476 atatttattatgtaatcccacaatgtattgaat---ctattattataaaagaaatgctataagcatcttt 542  Q
    ||||||||||||  |||||||| ||||||||||   |||||||||| || |||||| ||||| |||||||    
T  20609363 atatttattatggtatcccacattgtattgaatagactattattattaatgaaatgttataaccatcttt 20609432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 190 - 340
Target Start/End: Original strand, 1901956 - 1902104
Alignment:
Q  190 tttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgc 289  Q
    |||||||||||||||||| |||  | |||||  ||  ||| ||||| |||||||||||   | |||||||| ||||||||||||| ||||||||||||||    
T  1901956 tttgttttagctaaagtgatgccttttgatcgggt--atctggtaggtgttggcgaagttttgggtctttatcatgccattcaatagatgcaagacatgc 1902053  T
Q  290 atttcgacaatatggattttgagctagattctaagattacgagggatgctt 340  Q
    | |||||||| || ||||| ||||| |||||||| || ||||| |||||||    
T  1902054 aattcgacaacatagatttcgagcttgattctaaaataacgagagatgctt 1902104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 398 - 518
Target Start/End: Original strand, 25393353 - 25393473
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||| |||||| |||| |||||||||||| |||| ||||||||| | |||||||||||   ||||||||||||| |||  | || ||||||||||||| |    
T  25393353 gggtagagtttgttagacgacaagcgaattcggctgctcatgctctcgcaagagaagctgtttccttagctagtcccaccactttttatgtaatcccaaa 25393452  T
Q  498 atgtattgaatctattattat 518  Q
     ||||||||| | ||||||||    
T  25393453 ttgtattgaaacgattattat 25393473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 391 - 549
Target Start/End: Original strand, 44886295 - 44886453
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||  ||  |||  ||||||||  | |||||||||||||| | |||||||| | ||| |||||||||||  |    
T  44886295 aactctagggtggagtttgttaggcgacaagtcaacgcggttgctcatgcacttgcaagagaagccacgttcttagctaatcccactatttattatgata 44886394  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    | ||  |||||||||||||  | ||||| || |||||||||||| ||| ||||||||||    
T  44886395 tacccgaatgtattgaatccttaattatcaatgaaatgctataaacatgtttccttcaa 44886453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 17102836 - 17102798
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  17102836 tttcacaaactcaagggtagagtttattaggagacaagc 17102798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 30846562 - 30846456
Alignment:
Q  106 ttcaaatggaacatcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagctaaag 205  Q
    |||||||| || || |||||||||||||| |||   ||||||||||| ||||| ||| |||||||  |  |||||  |||||| |||||||||| |||||    
T  30846562 ttcaaatgcaatattgacgcggctttctctgaacaattccaacggacaggtatcggaatgtgtcttcgaaatgattctggaacttttgttttagttaaag 30846463  T
Q  206 tgctgca 212  Q
    || ||||    
T  30846462 tgatgca 30846456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 32019570 - 32019532
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  32019570 tttcacaaactcaagggtagagtttattaggagacaagc 32019532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 544
Target Start/End: Original strand, 43870493 - 43870538
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttcc 544  Q
    ||||||||||||||||||||||| ||||||| || ||||| |||||    
T  43870493 tgtattgaatctattattataaatgaaatgcaatgagcatgtttcc 43870538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 352 - 542
Target Start/End: Original strand, 45600824 - 45601013
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| |||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  45600824 attgatgagtgtcgagagcaatttttcccttccttcacaaactctagggtcgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagag 45600923  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| ||||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| ||| || | ||||||||||||||||||    
T  45600924 aagccatttccttagctagtcccactatttattatgcaatcccacaatgtcttgaatctattaatattaatg-aatgctataagcatcttt 45601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 382 - 534
Target Start/End: Complemental strand, 26333768 - 26333616
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatattt 481  Q
    |||||||||||||||||||| |||||||||||||||||||||| | |||||| |||||| |||||||| ||||||||||| ||||||||| | || ||||    
T  26333768 tctttcacaaactcaagggttgagtttattaggcgacaagcgattgcggcggttcatgcgttagcaagggaagccacttctttagctagtcctaacattt 26333669  T
Q  482 attatgtaatcccacaatgtattgaatctattattataaaagaaatgctataa 534  Q
    |||| || |||||||| |||||||||  |||||| || || ||||||||||||    
T  26333668 attacgttatcccacattgtattgaaattattatcattaatgaaatgctataa 26333616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 382 - 542
Target Start/End: Complemental strand, 38489020 - 38488860
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatattt 481  Q
    ||||| |||||||| ||||||||||||||  | |||||| ||||| |||| |||||||| ||||||||||||||||||| |||||||||| || ||||||    
T  38489020 tcttttacaaactctagggtcgagtttatctgacgacaaacgaatgcggcagctcatgccttagcaagagaagccactttcttagctagtccccatattt 38488921  T
Q  482 attatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| |||||| |  |||||||||  ||||||||| || ||||||||||||||||||||    
T  38488920 attatgaaatccctctttgtattgaaattattattattaatgaaatgctataagcatcttt 38488860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 101 - 340
Target Start/End: Original strand, 45600545 - 45600782
Alignment:
Q  101 ggagattcaaatggaacatcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagc 200  Q
    |||| |||||||| || || |||||| ||||||| |||   ||||||||||| |||||  || |||||||  ||||||||  | |||| |||||||||||    
T  45600545 ggaggttcaaatgcaatattgacgcgactttctctgaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctagaacttttgttttagc 45600644  T
Q  201 taaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaat 300  Q
    ||||||| |||  | |||||||||||||| ||||| ||||||||||||  | |||||||| ||||||||||||||||||||||||||| | ||  ||||     
T  45600645 taaagtgatgccttttgatcaagtttatctggtagttgttggcgaagctttgggtctttatcatgccattcaatggatgcaagacatgtaatt--acaac 45600742  T
Q  301 atggattttgagctagattctaagattacgagggatgctt 340  Q
    || ||||| ||||| |||||||| || ||||| |||||||    
T  45600743 atagatttcgagcttgattctaaaataacgagagatgctt 45600782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 382 - 542
Target Start/End: Original strand, 28385102 - 28385263
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatattt 481  Q
    ||||| |||||||| || |||||||||||  |||||||||| ||| |||| | |||||| |||||||||||||||||||||||||||||| || ||||||    
T  28385102 tcttttacaaactctagagtcgagtttatccggcgacaagcaaatgcggcagttcatgccttagcaagagaagccacttccttagctagtccccatattt 28385201  T
Q  482 attatgtaatcccacaatgtattgaatctattattataaaagaaatgctat-aagcatcttt 542  Q
    |||||| |||||| |  ||||||||| |||||||||| || |||||| ||| ||||||||||    
T  28385202 attatgaaatccctctttgtattgaaactattattattaatgaaatgttataaagcatcttt 28385263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 388 - 549
Target Start/End: Original strand, 17178850 - 17179012
Alignment:
Q  388 acaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatg 487  Q
    ||||||||  |||||||||| |||| ||||||||| ||| || || |||||||||| || ||||||||||| |||||||||||| ||| |||||||||||    
T  17178850 acaaactcctgggtcgagttcattatgcgacaagcaaatgcgacgactcatgctttggctagagaagccacatccttagctagtcccattatttattatg 17178949  T
Q  488 taatcccac-aatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
      ||||||| |||||||| || |||||||||| ||  ||||||||||| ||||||||| ||||    
T  17178950 atatcccacaaatgtattaaaactattattattaataaaatgctataaacatctttccctcaa 17179012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 549
Target Start/End: Original strand, 24083387 - 24083535
Alignment:
Q  403 gagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatc--ccacaatg 500  Q
    |||||| ||||||||||||| ||  |||  ||||||||  | |||||||||||||| | |||||||||| ||  |||||||||| | ||   ||| ||||    
T  24083387 gagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacgttcttagctagtcccgctatttattatatgatataccagaatg 24083486  T
Q  501 tattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    |||||||||  | ||||| || |||||||||||||||| ||||||||||    
T  24083487 tattgaatccttaattattaatgaaatgctataagcatgtttccttcaa 24083535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 320
Target Start/End: Original strand, 17178605 - 17178752
Alignment:
Q  173 gggatgatcatggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattca 272  Q
    ||||||||  ||||||  |||| |||||||||||| |||||| |||||||||||| || ||||| || || |||||  | ||| | || |||||  ||||    
T  17178605 gggatgattctggaaccattgtgttagctaaagtgttgcaatttgatcaagtttaccccgtagcagtaggtgaagcgttgggtttgtatcatgctcttca 17178704  T
Q  273 atggatgcaagacatgcatttcgacaatatggattttgagctagattc 320  Q
    |||||||||||| ||||| || || || || || |||||||| |||||    
T  17178705 atggatgcaagatatgcactttgataacatagactttgagcttgattc 17178752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 17431165 - 17431203
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  17431165 tttcacaaactcaagggtagagtttattaggagacaagc 17431203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 44002248 - 44002286
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  44002248 tttcacaaactcaagggtagagtttattaggagacaagc 44002286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 9e-60; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 352 - 549
Target Start/End: Complemental strand, 4480052 - 4479855
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| ||||||| || | || ||||||||||| |||||||||||||||||||||||| |||||| ||| |||||||| ||||||||||    
T  4480052 attgatgagtgtcgagagcaatttctcccttccttcacaaactctagggtcgagtttattaggcgacaaacgaatatggcagctcatgccttagcaagag 4479953  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||| || ||||||||||||| ||| ||||||||||  |||||||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||    
T  4479952 aagtcatttccttagctagtcccactatttattatacaatcccacaatgtattgaatctattattattaatgaaatgttataagcatcttttcttcaa 4479855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 403 - 549
Target Start/End: Original strand, 45004201 - 45004347
Alignment:
Q  403 gagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccacaatgta 502  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||| ||  |||||    
T  45004201 gagtttattaggcgacaagcgaattcggcggctcatgctttagcaagagaagccacttccctagctagtcccattatttattatgcaatctcattatgta 45004300  T
Q  503 ttgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||| |||||||||| || |||||||||||| ||||||| ||||||    
T  45004301 ttgaacctattattattaatgaaatgctataaacatcttttcttcaa 45004347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 382 - 542
Target Start/End: Complemental strand, 16878119 - 16877959
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatattt 481  Q
    ||||| |||||||| ||||||||||||||  ||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||| || ||||||    
T  16878119 tcttttacaaactctagggtcgagtttatccggcaacaagcgaatgcggcagctcatgccttagcaagagaagccacttccttagctagtccccatattt 16878020  T
Q  482 attatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| |||||| |  ||||||||| |||||||||| || ||||||||||||||||||||    
T  16878019 attatgaaatccctctttgtattgaaactattattattaatgaaatgctataagcatcttt 16877959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 403 - 542
Target Start/End: Original strand, 14485556 - 14485695
Alignment:
Q  403 gagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccacaatgta 502  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||| | | ||||||||||| |||||||  |||||    
T  14485556 gagtttattaggcgacaagcgaatgcggcggctcatgttttagcaagagaagccacttccctagctagtccaattatttattatgcaatcccattatgta 14485655  T
Q  503 ttgaatctattattataaaagaaatgctataagcatcttt 542  Q
    ||||| |||||||||| || ||||||||||||||||||||    
T  14485656 ttgaacctattattattaatgaaatgctataagcatcttt 14485695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 101 - 340
Target Start/End: Complemental strand, 4480333 - 4480094
Alignment:
Q  101 ggagattcaaatggaacatcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagc 200  Q
    |||| |||||||| || ||  |||||||||||||  ||   ||||||||||| |||||  || |||||||  ||||||||  |||||| |||||||||||    
T  4480333 ggaggttcaaatgcaatattaacgcggctttctctaaacaattccaacggacaggtatcagaatgtgtcttcgggatgattctggaacttttgttttagc 4480234  T
Q  201 taaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaat 300  Q
    ||||||| |||  | |||||||||||||||||||||||||||||| ||  | |||||||| |||||||||||| |||||||||||||||| ||||||||     
T  4480233 taaagtgatgccttttgatcaagtttatccggtagctgttggcgatgctttgggtctttatcatgccattcaacggatgcaagacatgcaattcgacaac 4480134  T
Q  301 atggattttgagctagattctaagattacgagggatgctt 340  Q
    || ||||| ||||| |||||||| || | ||| |||||||    
T  4480133 atagatttcgagcttgattctaaaataatgagagatgctt 4480094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 380 - 549
Target Start/End: Original strand, 42626034 - 42626203
Alignment:
Q  380 cctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatat 479  Q
    ||||||| ||||||||  || ||||||| |||||||||||||||||| |||||||||||||| | || |||||||| || |||||||||||| ||  |||    
T  42626034 cctcttttacaaactcccggttcgagttcattaggcgacaagcgaatgcggcggctcatgctctggctagagaagcaacatccttagctagtcccgttat 42626133  T
Q  480 ttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||||||| |||||||| ||||||||| |||||||||| ||  |||||||||||||||||||| |||||    
T  42626134 ttattatgttatcccacattgtattgaaactattattattaataaaatgctataagcatctttctttcaa 42626203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 388 - 537
Target Start/End: Complemental strand, 54561647 - 54561498
Alignment:
Q  388 acaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatg 487  Q
    |||||||| | ||| |||||||||||||||||||||||| ||||||||||||| || ||||||||||  | |||||||||||||||||  |||||||| |    
T  54561647 acaaactccatggtggagtttattaggcgacaagcgaatgcggcggctcatgccttggcaagagaagttatttccttagctagttccaccatttattaag 54561548  T
Q  488 taatcccacaatgtattgaatctattattataaaagaaatgctataagca 537  Q
    | |||||    |||||||||||||||||||| ||  ||||||||||||||    
T  54561547 ttatccccagttgtattgaatctattattattaatcaaatgctataagca 54561498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 409 - 543
Target Start/End: Complemental strand, 12526710 - 12526576
Alignment:
Q  409 attaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaat 508  Q
    |||||||||||| ||||| |||||||||||||| | |  ||| ||||||| |||||||||||| ||| |||||||||||  |||||||| |||||||||     
T  12526710 attaggcgacaaacgaatgcggcggctcatgctctggttagaaaagccacatccttagctagtcccattatttattatgctatcccacattgtattgaaa 12526611  T
Q  509 ctattattataaaagaaatgctataagcatctttc 543  Q
    |||||||||| || |||||||||||| ||||||||    
T  12526610 ctattattattaatgaaatgctataaacatctttc 12526576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 391 - 549
Target Start/End: Original strand, 8566014 - 8566172
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||| ||  ||| |||||||||| | ||| |||| ||||| || ||||||||| ||  | | |||||||  |    
T  8566014 aactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgata 8566113  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    | ||  | ||||||||  ||||||| || || |||||||||||||||||||||||||||    
T  8566114 tacccaattgtattgagactattatgatcaatgaaatgctataagcatctttccttcaa 8566172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 12526965 - 12526859
Alignment:
Q  184 ggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaag 283  Q
    ||||| |||||  |||||||||||||||||| ||||||||||||||| |||||  |    |||||  | ||| | || ||||| ||||||||||||||||    
T  12526965 ggaacctttgtgctagctaaagtgctgcaatttgatcaagtttatcccgtagcaatcaatgaagcgttgggtttgtatcatgctattcaatggatgcaag 12526866  T
Q  284 acatgca 290  Q
    |||||||    
T  12526865 acatgca 12526859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 471
Target Start/End: Original strand, 53394835 - 53394915
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagt 471  Q
    ||||| ||||| |||||| ||||| |||||| |||| |||  ||||||||| | |||||||||||||| || |||||||||    
T  53394835 aactctagggtggagttttttaggagacaagtgaatgcggttgctcatgctcttgcaagagaagccacgtctttagctagt 53394915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 340
Target Start/End: Complemental strand, 54561879 - 54561725
Alignment:
Q  185 gaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaaga 284  Q
    |||| ||||| ||||| ||||| ||||||| |||| |  |||| ||| | ||||||||||||||  | || ||||  ||||| ||| |||||||||||||    
T  54561879 gaacttttgtgttagccaaagtactgcaatttgattatctttacccg-tggctgttggcgaagctttgggcctttttcatgctattaaatggatgcaaga 54561781  T
Q  285 catgcatttcgacaatatggattttgagctagattctaagattacgagggatgctt 340  Q
     ||||| ||  | ||| | ||||||||||| ||||| ||| |||| ||||||||||    
T  54561780 tatgcactttaataatgttgattttgagctcgattcgaaggttacaagggatgctt 54561725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 548
Target Start/End: Complemental strand, 16739462 - 16739413
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttccttca 548  Q
    ||||||||| |||||||||| || |||||||||||||||| ||| |||||    
T  16739462 tgtattgaaactattattatcaatgaaatgctataagcatgttttcttca 16739413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 51110539 - 51110612
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagt 471  Q
    |||| ||||| | |||||||||||||||| |||| ||||||||  | ||||| || |||||||| |||||||||    
T  51110539 gggttgagttcactaggcgacaagcgaatgcggcagctcatgcacttgcaagggaggccacttctttagctagt 51110612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 352 - 542
Target Start/End: Complemental strand, 13638637 - 13638448
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| |||||||| | | || |||||| |||| ||||| | ||||||||||||||||||||||| ||| |||||||| ||||||||||    
T  13638637 attgatgagtgtcgagagcaattttcc-cttccttcacagactctagggtagggtttattaggcgacaagcgaatatggcagctcatgccttagcaagag 13638539  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    |||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||    
T  13638538 aagccatttctttagctagtcccactatttattatgtaatcccacaatgtattgaatctattactattaatgaaatgctataagcatcttt 13638448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 402 - 549
Target Start/End: Original strand, 29961871 - 29962018
Alignment:
Q  402 cgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccacaatgt 501  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||| | ||| ||||||||||| |||||||||||||    
T  29961871 cgagtttattaggcgacaagcgaatatggcagctcatgccttagcaagagaagccatttccttagctattcccactatttattatgcaatcccacaatgt 29961970  T
Q  502 attgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||||||||||||||| || |||||||||||||||||||| ||||||    
T  29961971 attgaatctattattattaatgaaatgctataagcatcttttcttcaa 29962018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 13638981 - 13638679
Alignment:
Q  38 gtgtgcagtcccaaaatgcccaatctggtcctgatgtgcagaaatgggtgccacctagcagcaggagattcaaatggaacatcgacgcggctttctcgga 137  Q
    |||||||| |||||||| ||| | |||| |||| ||| | | ||||| | || ||||| ||  |||| |||||||| || || ||||||| |||||| ||    
T  13638981 gtgtgcagccccaaaattccccaactggacctgctgtcccgcaatggtttcctcctagtagggggaggttcaaatgcaatattgacgcggatttctctga 13638882  T
Q  138 aactttccaacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagct 237  Q
    |   ||||||||||| |||||  || |||||||  ||||||||  |||||| |||||||||||||||||| |||  | |||||||||||||| |||||||    
T  13638881 acaattccaacggacaggtatcagaatgtgtcttcgggatgattctggaacttttgttttagctaaagtgatgccttttgatcaagtttatctggtagct 13638782  T
Q  238 gttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaatatggattttgagctagattctaagattacgagggatg 337  Q
    |||||||||||  | |||||||| ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||||||| || ||||| ||||    
T  13638781 gttggcgaagctttgggtctttatcatgccattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattctaaaataacgagagatg 13638682  T
Q  338 ctt 340  Q
    |||    
T  13638681 ctt 13638679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 352 - 503
Target Start/End: Complemental strand, 8862470 - 8862319
Alignment:
Q  352 attgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagag 451  Q
    |||||||||||||||| |||||||||| | || || |||||||| ||||||||||||||||||||||||||||||| ||| | || ||| ||||||||||    
T  8862470 attgatgagtgtcgagagcaatttttcccttccttgacaaactctagggtcgagtttattaggcgacaagcgaatatggcagttcgtgccttagcaagag 8862371  T
Q  452 aagccacttccttagctagttccaatatttattatgtaatcccacaatgtat 503  Q
    |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  8862370 aagccatttccttagctagtcccactatttattatgcaatcccacaatgtat 8862319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 382 - 537
Target Start/End: Complemental strand, 42510186 - 42510031
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatattt 481  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||||||| ||||  |||    
T  42510186 tctttcacaaactcaagggttgagtttattaggcgacaagcgaatgcggcggctcatgcgttagcaagggaagccacttctttagctagtcccaactttt 42510087  T
Q  482 attatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagca 537  Q
    |||||||  ||||||| ||||||||| ||||||| || || |||||| ||||||||    
T  42510086 attatgttgtcccacattgtattgaaactattatcattaatgaaatgttataagca 42510031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 78 - 340
Target Start/End: Complemental strand, 8862774 - 8862512
Alignment:
Q  78 gaaatgggtgccacctagcagcaggagattcaaatggaacatcgacgcggctttctcggaaactttccaacggactggtattggagtgtgtctcagggat 177  Q
    ||||||| | |||||||| ||  |||| |||||||| || || ||| || ||||||| |||   ||||||||||| |||||  || |||||||  |||||    
T  8862774 gaaatggtttccacctagtagggggaggttcaaatgcaatattgacacgactttctctgaacaattccaacggacaggtatcagaatgtgtcttcgggat 8862675  T
Q  178 gatcatggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatgga 277  Q
    |||  |||||| ||||||||||||||||||   |  | |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||    
T  8862674 gattttggaacttttgttttagctaaagtgaaaccttttgatcaagtttatccggtagctgttggcgaagctttaggtctttatcatgccattcaatgga 8862575  T
Q  278 tgcaagacatgcatttcgacaatatggattttgagctagattctaagattacgagggatgctt 340  Q
    ||||||||||||| ||||||||  | |||||  |||| |||||||| || ||||| |||||||    
T  8862574 tgcaagacatgcaattcgacaacctagatttcaagcttgattctaaaataacgagagatgctt 8862512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 398 - 542
Target Start/End: Original strand, 25997751 - 25997895
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||| |||||||||||||||||||||||| |||  |||||||| ||||||||||||||||| ||||||| |||| ||| || ||||| ||| ||||||||    
T  25997751 gggttgagtttattaggcgacaagcgaatgcgggcgctcatgccttagcaagagaagccacatccttagttagtcccattacttattttgttatcccaca 25997850  T
Q  498 atgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    || ||||||||||||||||||||| ||||||||||||| ||||||    
T  25997851 atatattgaatctattattataaatgaaatgctataagtatcttt 25997895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 145 - 320
Target Start/End: Original strand, 29961641 - 29961816
Alignment:
Q  145 caacggactggtattggagtgtgtctcagggatgatcatggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcg 244  Q
    |||||||| ||||| ||| |||||||  ||||||||  |||||| |||||||||||||||||| |||  | |||||||||||||||| ||||||||||||    
T  29961641 caacggacaggtatcggaatgtgtcttcgggatgattctggaacttttgttttagctaaagtgatgccttttgatcaagtttatccgatagctgttggcg 29961740  T
Q  245 aagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcgacaatatggattttgagctagattc 320  Q
    ||||  | |||||||| |||| |||||||||||||||||||||||| |||||||| || ||||| ||||| |||||    
T  29961741 aagctttgggtctttatcatgtcattcaatggatgcaagacatgcaattcgacaacatagatttcgagcttgattc 29961816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 398 - 537
Target Start/End: Original strand, 44675351 - 44675490
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||| |||||| ||||||||||||||||| |||| ||||||||| | ||||||||||||  ||||||||||||| |||  | |||||||||||||||| |    
T  44675351 gggtagagtttgttaggcgacaagcgaattcggctgctcatgctctcgcaagagaagccgtttccttagctagtcccatcacttattatgtaatcccaaa 44675450  T
Q  498 atgtattgaatctattattataaaagaaatgctataagca 537  Q
     ||||||||| | |||||||| || |||||||||||||||    
T  44675451 ttgtattgaaacgattattattaatgaaatgctataagca 44675490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 391 - 549
Target Start/End: Complemental strand, 17238813 - 17238655
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||| ||  |||  ||||||||  | |||||||||||||| | |||| ||||| ||| |||||||||||  |    
T  17238813 aactctagggtggagtttgttaggcgacaagccaacgcggttgctcatgcacttgcaagagaagccacattcttaactagtcccactatttattatgata 17238714  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    | ||  |||||||||||||  | ||||| || |||||||||||||||| ||||||||||    
T  17238713 tacccgaatgtattgaatccttaattatcaatgaaatgctataagcatgtttccttcaa 17238655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 183 - 320
Target Start/End: Complemental strand, 41864854 - 41864717
Alignment:
Q  183 tggaacgtttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaa 282  Q
    |||||| ||||| |||||||||||| |||||| ||||||||| || || ||||| |||||||| ||| | ||||| || |||||  ||||||||||||||    
T  41864854 tggaacttttgtgttagctaaagtgatgcaatttgatcaagtctaccccgtagcagttggcgaggcagtgggtctatatcatgcacttcaatggatgcaa 41864755  T
Q  283 gacatgcatttcgacaatatggattttgagctagattc 320  Q
    || ||||| || || ||||| || |||||||| |||||    
T  41864754 gatatgcaatttgataatatagactttgagcttgattc 41864717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 391 - 549
Target Start/End: Complemental strand, 8118939 - 8118781
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||| ||  ||| |||||||||| | ||| |||| ||||| || ||||||||| ||  | | |||||||  |    
T  8118939 aactctagggtggagtttgttaggcgacaagctaacgcggtggctcatgctcttgcacgagaggccacgtctttagctagtcccgctgtctattatgata 8118840  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    | ||  | ||||||||  ||||||| || || |||||||||||||||||||||||||||    
T  8118839 tacccaattgtattgagactattatgatcaatgaaatgctataagcatctttccttcaa 8118781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 382 - 459
Target Start/End: Complemental strand, 9941968 - 9941891
Alignment:
Q  382 tctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccact 459  Q
    ||||| |||||||| ||| | ||||||||  | ||||||||||||||||| |||||||| |||||| |||||||||||    
T  9941968 tcttttacaaactctaggattgagtttatctgacgacaagcgaatacggcagctcatgccttagcacgagaagccact 9941891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 17205220 - 17205160
Alignment:
Q  380 cctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgc 440  Q
    ||||||| |||||||   |||| |||||||||||||||||||||||| |||||||||||||    
T  17205220 cctcttttacaaactactgggttgagtttattaggcgacaagcgaatgcggcggctcatgc 17205160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 471
Target Start/End: Complemental strand, 40063232 - 40063146
Alignment:
Q  385 ttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagt 471  Q
    |||||||||||  |||| ||||| |||||||||||||||||| |||| |||||||| || ||| | || |||||||| ||| |||||    
T  40063232 ttcacaaactctcgggttgagttcattaggcgacaagcgaatgcggcagctcatgcatttgcaggggaggccacttctttaactagt 40063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 497 - 549
Target Start/End: Original strand, 48770218 - 48770270
Alignment:
Q  497 aatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||||||||| || ||||||| || |||||||||||||||| ||||||||||    
T  48770218 aatgtattgaaactcttattattaatgaaatgctataagcatatttccttcaa 48770270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 6621422 - 6621384
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  6621422 tttcacaaactcaagggtagagtttattaggagacaagc 6621384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 549
Target Start/End: Complemental strand, 13014995 - 13014945
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||||||| |||||||||| || |||||||||||||||| ||| ||||||    
T  13014995 tgtattgaaactattattatcaatgaaatgctataagcatgttttcttcaa 13014945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 15846976 - 15846938
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  15846976 tttcacaaactcaagggtagagtttattaggagacaagc 15846938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 15856186 - 15856148
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  15856186 tttcacaaactcaagggtagagtttattaggagacaagc 15856148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 17205445 - 17205404
Alignment:
Q  183 tggaacgtttgttttagctaaagtgctgcaatatgatcaagt 224  Q
    |||||| ||||| ||||||||||||||||||| |||||||||    
T  17205445 tggaacctttgtgttagctaaagtgctgcaatttgatcaagt 17205404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 3e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 353 - 543
Target Start/End: Complemental strand, 15543594 - 15543405
Alignment:
Q  353 ttgatgagtgtcgagtgcaatttttctcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagaga 452  Q
    |||||| ||| |||| |||||| ||||| | |||||||||    |||||||||||||||||||||||||||||| | || |||||||| ||| |||||      
T  15543594 ttgatgtgtgccgagagcaattcttctcttttttcacaaatggtagggtcgagtttattaggcgacaagcgaatgcagcagctcatgccttaacaaga-- 15543497  T
Q  453 agccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatctat---tattataaaagaaatgctataagcatctttc 543  Q
      | ||||||||||||||| | | ||||||||||| ||||||||  ||||||||||||||   |||||| || |||||||||||||||||||||    
T  15543496 --ctacttccttagctagtccgattatttattatgcaatcccacgttgtattgaatctattactattattaatgaaatgctataagcatctttc 15543405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 384 - 543
Target Start/End: Original strand, 33480385 - 33480544
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttat 483  Q
    |||||||||||| | |||||||||| ||||| || || ||||| ||| |||||||||  |||||||||||||||| | |||   |||| ||| |||||||    
T  33480385 tttcacaaactccatggtcgagtttgttaggagaaaaacgaatgcggtggctcatgccctagcaagagaagccacattcttttatagtcccattatttat 33480484  T
Q  484 tatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttc 543  Q
    |||| |||| |||  |||||||||||||||||||| || |||||||||||| ||||||||    
T  33480485 tatgaaatctcacgttgtattgaatctattattattaatgaaatgctataaacatctttc 33480544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 196 - 340
Target Start/End: Complemental strand, 15543781 - 15543637
Alignment:
Q  196 ttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgcatttcg 295  Q
    |||||||||||||| |||| |||||| |||||||||||||||||| |||||||  | |||||||| |||||||||||||||| |||||||||||| |||     
T  15543781 ttagctaaagtgctacaatttgatcatgtttatccggtagctgttagcgaagctttgggtctttatcatgccattcaatggaagcaagacatgcaattca 15543682  T
Q  296 acaatatggattttgagctagattctaagattacgagggatgctt 340  Q
    |||| |  || || ||||| ||||| || || ||||| |||||||    
T  15543681 acaacacagacttcgagcttgattcaaaaataacgagagatgctt 15543637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 398 - 507
Target Start/End: Complemental strand, 27009827 - 27009718
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||||||||| |||||||||||||||||| ||| || ||||||||| || |||||| |||| |||||||||| | ||| |||||||||||  ||||| ||    
T  27009827 gggtcgagttcattaggcgacaagcgaatgcggtggttcatgctttggctagagaaaccacatccttagctaatcccattatttattatgatatcccgca 27009728  T
Q  498 atgtattgaa 507  Q
    || |||||||    
T  27009727 atatattgaa 27009718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 33480162 - 33480285
Alignment:
Q  190 tttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgc 289  Q
    ||||||||||||||||||||||| | |||||||||||||||  ||| |||||| |  ||  | ||||| || |||||  |||| ||||||||||||||||    
T  33480162 tttgttttagctaaagtgctgcagtttgatcaagtttatccaatagttgttggtgtggctttgggtctatatcatgctcttcagtggatgcaagacatgc 33480261  T
Q  290 atttcgacaatatggattttgagc 313  Q
    | || || ||||| || |||||||    
T  33480262 aatttgataatatagactttgagc 33480285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 549
Target Start/End: Original strand, 13686116 - 13686166
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    |||||||||||| ||||||| || |||||||||||||||| ||||||||||    
T  13686116 tgtattgaatctcttattattaatgaaatgctataagcatatttccttcaa 13686166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 549
Target Start/End: Original strand, 14264039 - 14264197
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||| ||  |||  |||||||||||||||||||| ||||| || |  ||||||||    ||||||||||       
T  14264039 aactccagggtagagtttgttaggcgacaagccaacgcggttgctcatgctttagcaagagaggccacgtcttatgctagttctgccatttattatgatg 14264138  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    | ||    |||||| || || ||||||| || |||||||||||||||| ||||||||||    
T  14264139 tacccagttgtattaaaactcttattattaatgaaatgctataagcatgtttccttcaa 14264197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 12601937 - 12601889
Alignment:
Q  379 tcctctttcacaaactcaagggtcgagtttattaggcgacaagcgaata 427  Q
    |||| |||||||||||||||||| |||||||||||| ||||||| ||||    
T  12601937 tcctttttcacaaactcaagggtagagtttattaggagacaagcaaata 12601889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 542
Target Start/End: Original strand, 54886604 - 54886647
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    ||||||||||||||||| || || ||||||||||||||||||||    
T  54886604 tgtattgaatctattatcattaatgaaatgctataagcatcttt 54886647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 385 - 546
Target Start/End: Original strand, 6231396 - 6231557
Alignment:
Q  385 ttcacaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttatt 484  Q
    ||||||||||||||||||||||||||  |   |||||| |||  |||||||||||| ||||||||| ||| |||||| ||| ||||||||| ||||||||    
T  6231396 ttcacaaactcaagggtcgagtttatccgaaaacaagcaaatgtggcggctcatgccttagcaagaaaagtcacttctttaactagttccactatttatt 6231495  T
Q  485 atgtaatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttcctt 546  Q
    |||| |||||||| | ||||||| |||||||||| || |||||  ||||| | |||||||||    
T  6231496 atgtcatcccacattatattgaaactattattattaatgaaatagtataatcctctttcctt 6231557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 389 - 549
Target Start/End: Original strand, 6695577 - 6695737
Alignment:
Q  389 caaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgt 488  Q
    ||||||| || || |||||||||||||||||||||||| ||||  |||||||||| || |||||||||||||||||| |||||  |  || |||||||||    
T  6695577 caaactccagagttgagtttattaggcgacaagcgaatgcggcaactcatgctttggctagagaagccacttccttaactagtctctctacttattatgt 6695676  T
Q  489 aatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||  |   ||||||||| ||||||| || || |||||| |||||||| ||||| |||||    
T  6695677 aatcataagttgtattgaaactattatcattaatgaaatgttataagcaactttctttcaa 6695737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 190 - 340
Target Start/End: Original strand, 6231171 - 6231321
Alignment:
Q  190 tttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgc 289  Q
    ||||||||||||||||||||||| | || |||| | ||||| || ||| ||||| ||||  ||||||| || ||||| ||||||||| ||||||| ||||    
T  6231171 tttgttttagctaaagtgctgcagtttggtcaaatatatccagttgctattggcaaagctttaggtctctatcatgctattcaatggttgcaagatatgc 6231270  T
Q  290 atttcgacaatatggattttgagctagattctaagattacgagggatgctt 340  Q
    |||| |||||||| || || ||||| |||||||| || ||||| |||||||    
T  6231271 attttgacaatatagacttcgagcttgattctaaaataacgagagatgctt 6231321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 398 - 507
Target Start/End: Original strand, 30870823 - 30870932
Alignment:
Q  398 gggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccaca 497  Q
    |||| |||||||||||| |||||| ||||  ||||||||||||| | |||||||||| || |||| |||||||| ||| || |||||||||||||| | |    
T  30870823 gggtagagtttattaggtgacaagtgaatttggcggctcatgctcttgcaagagaagtcatttccctagctagtcccactacttattatgtaatcctaaa 30870922  T
Q  498 atgtattgaa 507  Q
     |||||||||    
T  30870923 ttgtattgaa 30870932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 542
Target Start/End: Original strand, 31029128 - 31029279
Alignment:
Q  391 aactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaa 490  Q
    ||||| ||||| |||||| ||||||||||||| || |||| ||||||| || | ||| |||| ||||| |||||||||||| ||  | | |||||||  |    
T  31029128 aactctagggtggagtttgttaggcgacaagctaacacggtggctcatactcttgcacgagaggccacgtccttagctagtcccgctgtctattatgata 31029227  T
Q  491 tcccacaatgtattgaatctattattataaaagaaatgctataagcatcttt 542  Q
    | ||  | ||||||||  ||||||| || || ||||||||||||||||||||    
T  31029228 tacccaattgtattgagactattatgatcaatgaaatgctataagcatcttt 31029279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 462 - 537
Target Start/End: Complemental strand, 35087916 - 35087841
Alignment:
Q  462 cttagctagttccaatatttattatgtaatcccacaatgtattgaatctattattataaaagaaatgctataagca 537  Q
    ||||||||||||||  |||||||||||||||||| | ||||||||| | |||||||| || |||||| ||||||||    
T  35087916 cttagctagttccatcatttattatgtaatcccaaattgtattgaaacgattattattaatgaaatgttataagca 35087841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 30589017 - 30589093
Alignment:
Q  433 gctcatgctttagcaagagaagccacttccttagctagttccaatatttattatgtaatcccacaatgtattgaatc 509  Q
    ||||||||| | |||||||||||||| | |||||||||||||  |||||||||||  || ||  |||||||||||||    
T  30589017 gctcatgctcttgcaagagaagccacgttcttagctagttccgttatttattatgatatgcctgaatgtattgaatc 30589093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 17812244 - 17812282
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  17812244 tttcacaaactcaagggtagagtttattaggagacaagc 17812282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 33132343 - 33132305
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  33132343 tttcacaaactcaagggtagagtttattaggagacaagc 33132305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 2e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 388 - 543
Target Start/End: Complemental strand, 22786181 - 22786026
Alignment:
Q  388 acaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatg 487  Q
    |||||||| ||||| |||||   ||||||||||||||||  |||||||||||  || ||| ||||||||| ||||||||||||| ||| |||||||||||    
T  22786181 acaaactccagggtggagttcgctaggcgacaagcgaatgtggcggctcatgtgttggcacgagaagccatttccttagctagtcccactatttattatg 22786082  T
Q  488 taatcccacaatgtattgaatctattattataaaagaaatgctataagcatctttc 543  Q
    | ||||||   ||||||||||| |||||||| || ||||||||||| ||| |||||    
T  22786081 ttatcccaagttgtattgaatccattattattaatgaaatgctataggcacctttc 22786026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 388 - 537
Target Start/End: Original strand, 38950906 - 38951053
Alignment:
Q  388 acaaactcaagggtcgagtttattaggcgacaagcgaatacggcggctcatgctttagcaagagaagccacttccttagctagttccaatatttattatg 487  Q
    |||||||  ||||| |||||||||||| ||||||||||| |||||| |||||  ||  |||||||||||| ||||||||||| | | | | |||||||||    
T  38950906 acaaacttcagggtggagtttattaggtgacaagcgaatgcggcggatcatgtcttgacaagagaagccatttccttagctaatcctactgtttattatg 38951005  T
Q  488 taatcccacaatgtattgaatctattattataaaagaaatgctataagca 537  Q
    | ||||||   ||||||||||| |||||  | || |||||||||||||||    
T  38951006 ttatcccaagttgtattgaatccattat--ttaatgaaatgctataagca 38951053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 36045023 - 36045072
Alignment:
Q  497 aatgtattgaatctattattataaaagaaatgctataagcatctttcctt 546  Q
    |||||||||||||| ||||||| || |||||||||||||||| |||||||    
T  36045023 aatgtattgaatctcttattattaatgaaatgctataagcatatttcctt 36045072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 337
Target Start/End: Original strand, 38950678 - 38950825
Alignment:
Q  190 tttgttttagctaaagtgctgcaatatgatcaagtttatccggtagctgttggcgaagcactaggtctttaccatgccattcaatggatgcaagacatgc 289  Q
    ||||| ||||| |||||| |||||| |||| |  |||| || || ||||||||||||||  | || ||||  ||||| ||||||| ||||||||| || |    
T  38950678 tttgtgttagccaaagtgttgcaatttgattatctttaccccgtggctgttggcgaagctttgggcctttttcatgctattcaattgatgcaagatatac 38950777  T
Q  290 atttcgacaatatggattttgagctagattctaagattacgagggatg 337  Q
    | ||  | ||| | ||||||||||| ||||| ||| ||||||||||||    
T  38950778 aatttaataatgttgattttgagctcgattcgaaggttacgagggatg 38950825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 549
Target Start/End: Complemental strand, 2157809 - 2157759
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||||||| |||||||||| || |||||||||||||||| ||| ||||||    
T  2157809 tgtattgaaactattattatcaatgaaatgctataagcatgttttcttcaa 2157759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 11123599 - 11123637
Alignment:
Q  384 tttcacaaactcaagggtcgagtttattaggcgacaagc 422  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  11123599 tttcacaaactcaagggtagagtttattaggagacaagc 11123637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 499 - 549
Target Start/End: Original strand, 13649556 - 13649606
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttccttcaa 549  Q
    ||||||||||   |||||||||| ||||||||||||||||||||| |||||    
T  13649556 tgtattgaataacttattataaatgaaatgctataagcatctttctttcaa 13649606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 499 - 543
Target Start/End: Complemental strand, 21854 - 21810
Alignment:
Q  499 tgtattgaatctattattataaaagaaatgctataagcatctttc 543  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||    
T  21854 tgtattgaatctcttattataaatgaaatgttataagcatctttc 21810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University