View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104-Insertion-3 (Length: 744)
Name: NF3104-Insertion-3
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 740
Target Start/End: Original strand, 39732342 - 39733088
Alignment:
| Q |
8 |
aaatgcaacgtctatgacaagcagtagtgcgttgcttcttttgttttgtctcttgtttccaaacttttccaatatcttgtgcaattttaacagcatcaga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732342 |
aaatgcaacgtctatgacaagcagtagtgcgttgcttcttttgttttgtctcttgtttccaaacttttccaatatcttgtgcaattttaacagcatcaga |
39732441 |
T |
|
| Q |
108 |
tgaagcaccagaaagccctctctttgtgaaccctacagcataaagtcccgaatttcccttccaaccatgtggaaatggcatctttgggtatccatttttt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39732442 |
tgaagcaccagaaagccctctctttgtgaaccctacagcataaagtcctgaatttcccttccaaccatgtggaaatggcatctttgggtatccatttttt |
39732541 |
T |
|
| Q |
208 |
gagaaaaattcaccttcctgtataacataaccaaaattaattagttccttgatcacattaacaaataataataatt-atagtaaaaatgaagcttctaaa |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
39732542 |
gagaaaaattcaccttcctgtataacataaccaaaattaattagttccttgatcacattaacaaataataataattaatagtaaaaaagaagcttctaaa |
39732641 |
T |
|
| Q |
307 |
ataggaccatgccttaaaaaagtttaaaatttgaccttgtacagttaaatcctctacatgtcttttctgtcatccggtgaaatctttgttgtcggaatat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39732642 |
ataggaccatgccttaaaaaagtttaaaatttgacattgtacagttaaatcctctacatgtcttttctgtcatcctgtgaaatctttgttgtcggaatat |
39732741 |
T |
|
| Q |
407 |
tctaacagtccagatgttagattaatc---caacaaataagatttaaccggagtga----------atttaagtcaactactaaagtgta----nnnnnn |
489 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
39732742 |
tctaacagtccagatgttagattaatccaacaacaaataagatttaaccggcgtgaccagaacaggatttaagtcaactactaaagtgtatttttatttt |
39732841 |
T |
|
| Q |
490 |
nnnatgtggtgggaaaagttnnnnnnnnnnnncagatgatctagaacatatattcacctgaagcccaagaaagggtcattgctgcggtaactagtagcaa |
589 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||| |
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| T |
39732842 |
tttatgtggt-ggaaaagttaaaaaagaaaaacagatgatctagaacatatattcacctgaag-ccaag-aagggacattgctgcggtaaccagtagcaa |
39732938 |
T |
|
| Q |
590 |
gaacaactgcatcaatatcaagcttttcacccttaaacaagcctcacttc-tcatttttattaaaatcttttgattccaggtacaacatttatatcaccg |
688 |
Q |
| |
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||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
39732939 |
gaacaactgcatcaatatcaagcttttcaccatt-aacaagctcaacttcaccatttttatt-aattcttttgattccaggtacaacatttatatcaccg |
39733036 |
T |
|
| Q |
689 |
gatctaatcttctcctaggcaccaatgttcaaaattggtgtctttcctacgg |
740 |
Q |
| |
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|||||||| |||||| |||||||||||| ||||| |||||||||||||||| |
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|
| T |
39733037 |
gatctaattttctccaaggcaccaatgtccaaaaccggtgtctttcctacgg |
39733088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 8 - 459
Target Start/End: Complemental strand, 39840619 - 39840167
Alignment:
| Q |
8 |
aaatgcaacgtctatgacaagcagtagtgcgttgcttcttttgttttgtctcttgtttccaaacttttccaatatcttgtgcaattttaacagcatcaga |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840619 |
aaatgcaacgtctatgacaagcagtagtgcgttgcttcttttgttttgtctcttgtttccaaacttttccaatatcttgtgcaattttaacagcatcaga |
39840520 |
T |
|
| Q |
108 |
tgaagcaccagaaagccctctctttgtgaaccctacagcataaagtcccgaatttcccttccaaccatgtggaaatggcatctttgggtatccatttttt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840519 |
tgaagcaccagaaagccctctctttgtgaaccctacagcataaagtcctgaatttcccttccaaccatgtggaaatggcatctttgggtatccatttttt |
39840420 |
T |
|
| Q |
208 |
gagaaaaattcaccttcctgtataacataaccaaaattaattagttccttgatcacattaacaaataataataatt-atagtaaaaatgaagcttctaaa |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| |
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| T |
39840419 |
gagaaaaattcaccttcctgtataacataaccaaaattaattagttccttgatcacattaacaaataataataattaatggtaaaaaagaagcttctaaa |
39840320 |
T |
|
| Q |
307 |
ataggaccatgccttaaaaaagtttaaaatttgaccttgtacagttaaatcctctacatgtcttttctgtcatccggtgaaatctttgttgtcggaatat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840319 |
ataggaccatgccttaaaaaagtttaaaatttgacattgtacagttaaatcctctacatgtcttttctgtcatccggtgaaatctttgttgtcggaatat |
39840220 |
T |
|
| Q |
407 |
tctaacagtccagatgttagattaatccaacaaataagatttaaccggagtga |
459 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840219 |
tctaacagtccagatgttagattaatccaacaaataagatttaaccggagtga |
39840167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 522 - 740
Target Start/End: Complemental strand, 39840085 - 39839870
Alignment:
| Q |
522 |
cagatgatctagaacatatattcacctgaagcccaagaaagggtcattgctgcggtaactagtagcaagaacaactgcatcaatatcaagcttttcaccc |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39840085 |
cagatgatctagaacatatattcacctgaagcc-aagaa-gggacattgctgcggtaaccagtagcaagaacaactgcatcaatatcaagcttttcacca |
39839988 |
T |
|
| Q |
622 |
ttaaacaagcctcacttctc-atttttattaaaatcttttgattccaggtacaacatttatatcaccggatctaatcttctcctaggcaccaatgttcaa |
720 |
Q |
| |
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|||| ||||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |
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| T |
39839987 |
ttaa-caagctcaacttcaccatttttattaat-tcttttgattccaggtacaacatttatatcaccggatctaattttctccaaggcaccaatgtccaa |
39839890 |
T |
|
| Q |
721 |
aattggtgtctttcctacgg |
740 |
Q |
| |
|
|| |||||||||||||||| |
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| T |
39839889 |
aaccggtgtctttcctacgg |
39839870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 29856232 - 29856450
Alignment:
| Q |
8 |
aaatgcaacgtctatgacaagcagtagtgcgttgcttcttttgttttgtctcttgtttccaaacttttccaatatcttgtgcaattttaacagcatcaga |
107 |
Q |
| |
|
||||||||||| ||| |||||| |||||| || |||||||| || |||||||||||||||||| |||||||||| ||||||| ||||||| | |
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|
| T |
29856232 |
aaatgcaacgtttattgcaagcattagtgcagtgtttcttttgcttaatctcttgtttccaaacttgagcaatatcttgagcaatttgtttagcatcata |
29856331 |
T |
|
| Q |
108 |
tgaagcaccagaaagccctctctttgtgaaccctacagcataaagtcccgaatttcccttccaaccatgtggaaatggcatctttgggtatccatttttt |
207 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| |||||||||||||| | |||| |||||||||| || ||||| |||||| ||||||| || |
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| T |
29856332 |
tgaagaaccagagagccctctctttgtaaacccaacagcataaagtccaacagttcctttccaaccattagggaatggtgactttggaaatccattcttg |
29856431 |
T |
|
| Q |
208 |
gagaaaaattcaccttcct |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
29856432 |
gagaaaaattcaccttcct |
29856450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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