View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104-Insertion-4 (Length: 723)
Name: NF3104-Insertion-4
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 275 - 674
Target Start/End: Complemental strand, 43616816 - 43616437
Alignment:
| Q |
275 |
aattgtcacttattgtaaaactaaggaaagtatcctaaatagcagaattcatgatgttgttttatgaagcactagacactactactataaactaatgcta |
374 |
Q |
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| T |
43616816 |
aattgtcacttattgtaaaactaaggaaagtatcctaaatagcagaattcatgatgttgttttatgaagcactagacactactactataaactaatgcta |
43616717 |
T |
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| Q |
375 |
gcttagcttgtttggtctatagaggtaaagtgtagcagtagcaccatcaccaagggcggttattattgaataaaatgaaatgcattgaatcccttatttt |
474 |
Q |
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| T |
43616716 |
gcttagcttgtttggtctatagaggtaaagtgtagcagtagcaccatcaccaagggcggttattattgaataaaatgaaatgcattgaat-ccttatttt |
43616618 |
T |
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| Q |
475 |
cnnnnnnngaaagaaggactattaacatatttttcaacagggagggtctttgttaacatatgcctcggagtacctgttaatgatagtacatggttagcat |
574 |
Q |
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| T |
43616617 |
c-aaaaaagaaagaaggactattaacatatttttcaacagggagggtctttgttaacatatgcc-cgaagtacat-----------------cttagcat |
43616537 |
T |
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| Q |
575 |
ttatcatttttaatattatagaaaatgctacaatattactcgtaattggttgatttgaggaggactacaaacaccacatttttcaaactccctattttat |
674 |
Q |
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| T |
43616536 |
ttatcatttttaatattatagaaaacgctataatattacttgtaatttgttgatttgaggaggattagaaacactacatttttcaaattcactattttat |
43616437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 43617081 - 43616878
Alignment:
| Q |
10 |
tctttaatgatgctattttgtcatctctctgttcccgagttggagggtcggaaattttgttgggggatgtaatgagagtttagagatgagaacatgtctt |
109 |
Q |
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| T |
43617081 |
tctttaatgatgctattttgtcatctctctgttcccgagttggagggtcggaaattttgttgggggatgtgatgagagtttagagatgagaacatgtctt |
43616982 |
T |
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| Q |
110 |
actttcaaccttaatttaaaattattcaaggcatacacataaaaaattactccttattttgtatgttcaaataatttttatttgaagttatatttgtaag |
209 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43616981 |
actttcaacctcaatttaaaattattcaaggcatacacataaaaaattactccttattttgtatgttcaaataatttttatttgaagttatatttataag |
43616882 |
T |
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| Q |
210 |
agta |
213 |
Q |
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|||| |
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| T |
43616881 |
agta |
43616878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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