View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104R-Insertion-2 (Length: 578)
Name: NF3104R-Insertion-2
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104R-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 49125902 - 49126426
Alignment:
| Q |
9 |
taaatataatttacatggatgttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaac |
108 |
Q |
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| T |
49125902 |
taaatataatttacatggatgttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaac |
49126001 |
T |
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| Q |
109 |
ttggagggtatagtgaataatatagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatt |
208 |
Q |
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| T |
49126002 |
ttggagggtatagtgaataatatagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatt |
49126101 |
T |
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| Q |
209 |
taagtccctcgcaatatcataaattttgttattgctgctcagtttttcatctcacttttgaaaaggtgtcaactccgatccatgtagccaactccatcag |
308 |
Q |
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| T |
49126102 |
taagtccctcgcaatatcataaattttgttattgctgctcagtttttcatctcgcttttgaaaaggtgtcaactccgatccatgtagccaacttcgtcag |
49126201 |
T |
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| Q |
309 |
ccagagagtctgtgtaaaagctacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatcaaaattcagtagctgtta |
408 |
Q |
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| T |
49126202 |
tcagagagtctgtgtaaaagctacaaaatcttagttgtctgttacatgcgtttagatgttccaagcaaggatttcttatatcaaaattcagtagctgtta |
49126301 |
T |
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| Q |
409 |
cataggctttttgacagacggagttagcgataaggtccaaaactgaaacattttcataaatgagaaacccaaatgtga---gnnnnnnnntgaaaattat |
505 |
Q |
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| T |
49126302 |
cataggctttttgacagacggagttagctataaggtccaaaactgaaacattttcataaatgagaaacccaaatgtgaaagaaaaaaaaatgaaaattat |
49126401 |
T |
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| Q |
506 |
catattttgagggacaacagacata |
530 |
Q |
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| T |
49126402 |
catattttgagggacaacggacata |
49126426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 37664387 - 37664463
Alignment:
| Q |
69 |
taataaattaaccaactaacaagtgtctttgtcggaaaacttggagggtatagtgaataatatagttacatgtttcc |
145 |
Q |
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| T |
37664387 |
taatgaattaaccaattaacaaatatctttgtcagaaatcacagagcgtgtagtgaataatatggttacatgtttcc |
37664463 |
T |
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