View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104R-Insertion-3 (Length: 530)
Name: NF3104R-Insertion-3
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104R-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 37220300 - 37220819
Alignment:
| Q |
11 |
tagaagaatatacaaacctcttgaaccattagagaccatttgggtccgatcttggcatgaagttcaacgattttctgttcttcttctctagtaattgaac |
110 |
Q |
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| T |
37220300 |
tagaagaatatacaaacctcttgaaccattagagaccatttgggtccgatcttggcatgaagttcaacgattttctgttcttcttctctagtaattgaac |
37220399 |
T |
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| Q |
111 |
ccttttttaaatcaggatgtagatgattaagccatcttaaacgacaacttttaccacatcgaaaaagttcggttttcttttttacatcatcccaattgcc |
210 |
Q |
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| T |
37220400 |
ccttttttaaatcaggatgtagatgattaagccatcttaaacgacaacttttaccacatcgaaaaagttcggttttcttttttacatcatcccaattgcc |
37220499 |
T |
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| Q |
211 |
ctctccatattttctcacgtattcttttaatattgcatcctcttgcaatgaccatgctcctttcttcaactttatagtatcactgccattagaatttgac |
310 |
Q |
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| T |
37220500 |
ctctccatattttctcacgtattcttttaatattgcatcctcgtgcaatgaccatgctcctttcttcaactttatagtatcactgccattagaatttgac |
37220599 |
T |
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| Q |
311 |
atgattacttacggaaggatgagaggatggaaattgttctatttataataggatttataaagtagttagaggtaaatacggagagtttttgttacttcac |
410 |
Q |
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| T |
37220600 |
atgattacttacggaaggatgagaggatggaaattgttgtatttataataggatttataaagtagttagaggtaaatacggagagtttttgtaacttcac |
37220699 |
T |
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| Q |
411 |
ttnnnnnnnnntattgttgttacaatatactactagctgaatatcaaagatctaaaagataaagttgcaaccagctgaatatatcaaagatttaaaagat |
510 |
Q |
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| T |
37220700 |
ttaaaaaaatatattgttgttacaatatactactagctgaatatcaaagatctaaaagataaagttgaaaccagctgaatatatcaaagatttaaaagat |
37220799 |
T |
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| Q |
511 |
aaagttcaatttgttcgcct |
530 |
Q |
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| T |
37220800 |
aaagttcaatttgttcgcct |
37220819 |
T |
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