View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3104R-Insertion-4 (Length: 443)

Name: NF3104R-Insertion-4
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3104R-Insertion-4
NF3104R-Insertion-4
[»] chr6 (24 HSPs)
chr6 (286-440)||(5065390-5065544)
chr6 (335-440)||(5126619-5126724)
chr6 (335-440)||(5177939-5178044)
chr6 (335-440)||(5279764-5279869)
chr6 (336-440)||(5688894-5688998)
chr6 (150-257)||(5065296-5065403)
chr6 (45-133)||(5126272-5126360)
chr6 (286-428)||(5253745-5253887)
chr6 (150-263)||(5253868-5253981)
chr6 (335-440)||(5242502-5242607)
chr6 (342-443)||(5346226-5346327)
chr6 (339-440)||(5100812-5100913)
chr6 (339-440)||(5135913-5136014)
chr6 (326-439)||(5098412-5098525)
chr6 (355-440)||(5398246-5398331)
chr6 (335-440)||(5427100-5427205)
chr6 (148-194)||(5126399-5126445)
chr6 (9-46)||(5126179-5126216)
chr6 (148-257)||(5126471-5126580)
chr6 (335-440)||(23127300-23127405)
chr6 (406-440)||(5156074-5156108)
chr6 (228-278)||(5178125-5178175)
chr6 (335-440)||(5072672-5072777)
chr6 (412-440)||(5372297-5372325)
[»] chr3 (4 HSPs)
chr3 (355-440)||(47985403-47985488)
chr3 (355-440)||(48003977-48004062)
chr3 (355-440)||(47994690-47994775)
chr3 (355-440)||(48013262-48013347)
[»] chr7 (1 HSPs)
chr7 (336-440)||(36212912-36213016)
[»] chr4 (5 HSPs)
chr4 (296-428)||(4122595-4122727)
chr4 (335-385)||(4132608-4132658)
chr4 (335-382)||(4346621-4346668)
chr4 (335-382)||(4362810-4362857)
chr4 (339-385)||(4319296-4319342)
[»] scaffold1476 (1 HSPs)
scaffold1476 (395-439)||(43-87)
[»] chr2 (1 HSPs)
chr2 (395-439)||(22583352-22583396)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 440
Target Start/End: Original strand, 5065390 - 5065544
Alignment:
Q  286 ctaacaatagcattcttatcttgtgcatgggactcctctgctttgtcagcaattggttcaccatatatgagataaactgttatcttcttcacaatgaaac 385  Q
    ||||||||| |||||||||||||||||||  |||||||  | || ||||||||||||||| |||||||||||||||||||| || ||||||||| |||||    
T  5065390 ctaacaataacattcttatcttgtgcatgacactcctcccccttttcagcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaac 5065489  T
Q  386 ggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgatac 440  Q
     || || ||||||| || |||  || ||||| || |||||||| | |||||||||    
T  5065490 cgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatac 5065544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 5126619 - 5126724
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    ||||||||||| |||||||||||||||| | | |||||||||||||||||| || || ||||||| || ||| ||||||||||||||||| ||||| |||    
T  5126619 caattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatact 5126718  T
Q  435 tgatac 440  Q
    ||||||    
T  5126719 tgatac 5126724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 5178044 - 5177939
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    ||||||||||| |||||| ||||||||||||| | |||||||||||||||| || || ||||||| || ||||||| |||||||||| |||||||| |||    
T  5178044 caattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatact 5177945  T
Q  435 tgatac 440  Q
    ||||||    
T  5177944 tgatac 5177939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 5279869 - 5279764
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    ||||||||||| |||||| ||||||||||||| | |||||||||||||||| || || ||||||| || ||||||| |||||||||| |||||||| |||    
T  5279869 caattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatact 5279770  T
Q  435 tgatac 440  Q
    ||||||    
T  5279769 tgatac 5279764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 5688894 - 5688998
Alignment:
Q  336 aattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagactt 435  Q
    |||||||||| |||||| ||||||||||||| | |||||||||||||||| || || |||||||| | ||||||| |||||||||| |||||||| ||||    
T  5688894 aattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatactt 5688993  T
Q  436 gatac 440  Q
    |||||    
T  5688994 gatac 5688998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 5065296 - 5065403
Alignment:
Q  150 ttcattttcttcgccactacaaacaattggttcattcttatcttgtgcatgacaagaggccactcctacaaagtattgattttcatcaccactactaaca 249  Q
    |||||||||||| |||||||||||||||| ||| ||||||| |||||||||| |||||  | | |||| |||| ||| |||||||||||| |||||||||    
T  5065296 ttcattttcttcaccactacaaacaattgattcgttcttatgttgtgcatgagaagagatctcgcctagaaagcattcattttcatcaccgctactaaca 5065395  T
Q  250 ataacatt 257  Q
    ||||||||    
T  5065396 ataacatt 5065403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 45 - 133
Target Start/End: Original strand, 5126272 - 5126360
Alignment:
Q  45 ctagtagcaccgatacttacccaaccattcttttacttccttccatctactctcgagaattttcttctgtttgttatgttttaaatcat 133  Q
    |||| |||||| ||||||| |||||||||||||||||  ||||||||| |||| |||||||||||||| ||||||||| ||||||||||    
T  5126272 ctagcagcaccaatacttatccaaccattcttttactgtcttccatctcctcttgagaattttcttctttttgttatgctttaaatcat 5126360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 428
Target Start/End: Complemental strand, 5253887 - 5253745
Alignment:
Q  286 ctaacaatagcattcttatcttgtgcatgggactcctctgctttgtcagcaattggttcaccatatatgagataaactgttatcttcttcacaatgaaac 385  Q
    ||||||||| ||||| |||||||| ||||  ||||||| || || |||||||| || ||  |||||||||||||||||||  || |||||||||||||||    
T  5253887 ctaacaataacattcatatcttgtccatgacactcctccgccttttcagcaatgggctcgtcatatatgagataaactgtcgtcctcttcacaatgaaac 5253788  T
Q  386 ggtactgaaaaacagcagcaacctcaactttgttaccaggttc 428  Q
     || || ||||||| || ||| ||| ||||| || ||||||||    
T  5253787 tgttctcaaaaacaacaacaaactccactttatttccaggttc 5253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 263
Target Start/End: Complemental strand, 5253981 - 5253868
Alignment:
Q  150 ttcattttcttcgccactacaaacaattggttcattcttatcttgtgcatgacaagaggccactcct-acaaagtattgattttcatcaccactactaac 248  Q
    ||||||||||||  |||||||||||||||||| |||||||| |||||||| | |||| | |||| || |||||  ||| |||||||| ||||||||||||    
T  5253981 ttcattttcttcatcactacaaacaattggttgattcttatattgtgcattagaaga-gacacttctaacaaaacattcattttcataaccactactaac 5253883  T
Q  249 aataacattgatatc 263  Q
    ||||||||| |||||    
T  5253882 aataacattcatatc 5253868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 5242502 - 5242607
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    ||||||||||| |||||| ||||||||||  | |||||||||||||||||| || || |||||||  | | ||||| ||||||||||||||||||| |||    
T  5242502 caattggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatact 5242601  T
Q  435 tgatac 440  Q
    | ||||    
T  5242602 tcatac 5242607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 443
Target Start/End: Complemental strand, 5346327 - 5346226
Alignment:
Q  342 ttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgataca 441  Q
    |||| ||||||||||||||| || | ||||||||||||||||||  | || || |||| |  ||||||| ||||||||||||||||||| ||||||||||    
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  442 ac 443  Q
    ||    
T  5346227 ac 5346226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 5100812 - 5100913
Alignment:
Q  339 tggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgat 438  Q
    ||||||| | |||| ||||||||||| | |||| ||||||||||||| || || ||||||| || | ||||| ||||||||||| ||||||| |||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  439 ac 440  Q
    ||    
T  5100912 ac 5100913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 440
Target Start/End: Original strand, 5135913 - 5136014
Alignment:
Q  339 tggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgat 438  Q
    ||||||| | |||| ||||||||||| | |||| ||||||||||||| || || ||||||| || | ||||| ||||||||||| ||||||| |||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  439 ac 440  Q
    ||    
T  5136013 ac 5136014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 326 - 439
Target Start/End: Complemental strand, 5098525 - 5098412
Alignment:
Q  326 ctttgtcagcaattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccagg 425  Q
    |||| ||| ||||| ||||| ||||||  |||||||||| | |||| ||||||||||||| || ||  |||||| ||   ||||| ||||||||||||||    
T  5098525 ctttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccagg 5098426  T
Q  426 ttctagacttgata 439  Q
    ||||| ||||||||    
T  5098425 ttctatacttgata 5098412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 5398331 - 5398246
Alignment:
Q  355 agataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgatac 440  Q
    |||||||||||| |||||||||||||||||   | ||  ||||||    ||||||||||||||||||||||||||| |||||||||    
T  5398331 agataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatac 5398246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 440
Target Start/End: Complemental strand, 5427205 - 5427100
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    ||||||||||| |||||| ||||||||||  | ||||| |||||| ||||| || || |||||||  | | ||||| | ||||||||||||||||| |||    
T  5427205 caattggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatact 5427106  T
Q  435 tgatac 440  Q
    ||||||    
T  5427105 tgatac 5427100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 5126399 - 5126445
Alignment:
Q  148 ccttcattttcttcgccactacaaacaattggttcattcttatcttg 194  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||    
T  5126399 ccttccttttcttcagcactacaaacaattggttcattcttatcttg 5126445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 5126179 - 5126216
Alignment:
Q  9 aatgcttcagaaaccagagcaatagtagctaccaatct 46  Q
    |||| |||||||||||||||||||||||||||||||||    
T  5126179 aatgtttcagaaaccagagcaatagtagctaccaatct 5126216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 5126471 - 5126580
Alignment:
Q  148 ccttcattttcttcgccactacaaacaattggttcattcttatcttgtgcatgacaagaggccactcctacaaagtattgattttcatcaccactactaa 247  Q
    ||||||||||||||  |||||| |||||| |||| |||||| |||| ||||||| ||||| || ||| | |||||  || | ||| ||||||||||| ||    
T  5126471 ccttcattttcttcatcactactaacaataggttgattcttttcttctgcatgagaagagacctctctttcaaagctttcagttttatcaccactacaaa 5126570  T
Q  248 caataacatt 257  Q
    || |||||||    
T  5126571 cattaacatt 5126580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 23127300 - 23127405
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    ||||| ||||| ||||||  |||||||||||| | |||||||||| |||||  | || ||||||  || ||||||| | ||||||||||||||||  |||    
T  23127300 caattagttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcact 23127399  T
Q  435 tgatac 440  Q
    ||||||    
T  23127400 tgatac 23127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 440
Target Start/End: Original strand, 5156074 - 5156108
Alignment:
Q  406 acctcaactttgttaccaggttctagacttgatac 440  Q
    ||||| |||||||||||||||||||||||||||||    
T  5156074 acctccactttgttaccaggttctagacttgatac 5156108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 5178175 - 5178125
Alignment:
Q  228 attttcatcaccactactaacaataacattgatatcatgtgcgttagaaga 278  Q
    |||||||||||||||||||||||| ||||||  ||| ||||| ||||||||    
T  5178175 attttcatcaccactactaacaatgacattgtaatcttgtgcattagaaga 5178125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 440
Target Start/End: Original strand, 5072672 - 5072777
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagact 434  Q
    |||||| |||| | ||||||||||||| | || |||| ||||||||||||  || || || |||| |  ||||||| |||| ||||||||| |||| |||    
T  5072672 caattgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatact 5072771  T
Q  435 tgatac 440  Q
    ||||||    
T  5072772 tgatac 5072777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 440
Target Start/End: Complemental strand, 5372325 - 5372297
Alignment:
Q  412 actttgttaccaggttctagacttgatac 440  Q
    |||||||||||||||||||||||||||||    
T  5372325 actttgttaccaggttctagacttgatac 5372297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 47985403 - 47985488
Alignment:
Q  355 agataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgatac 440  Q
    |||||||||| |||| |||||||||||||||  | || ||||||| || | ||||| ||||||||||| ||||||| |||||||||    
T  47985403 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatac 47985488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 48003977 - 48004062
Alignment:
Q  355 agataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgatac 440  Q
    |||||||||| |||| |||||||||||||||  | || ||||||| || | ||||| ||||||||||| ||||||| |||||||||    
T  48003977 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatac 48004062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 47994690 - 47994775
Alignment:
Q  355 agataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgatac 440  Q
    |||||||||| |||| |||||||||||||||  | || ||||||| || | ||||| ||||||||||| | ||||| |||||||||    
T  47994690 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatac 47994775  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 48013262 - 48013347
Alignment:
Q  355 agataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagacttgatac 440  Q
    |||||||||| |||| |||||||||||||||  | || ||||||| || | ||||| ||||||||||| | ||||| |||||||||    
T  48013262 agataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatac 48013347  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 440
Target Start/End: Original strand, 36212912 - 36213016
Alignment:
Q  336 aattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaaaacagcagcaacctcaactttgttaccaggttctagactt 435  Q
    |||||||||| |||| ||||||||||  | | |||||||||||||||||  || || ||||||| || ||||||| | ||| | ||||||||||| ||||    
T  36212912 aattggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatactt 36213011  T
Q  436 gatac 440  Q
    |||||    
T  36213012 gatac 36213016  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 4122595 - 4122727
Alignment:
Q  296 cattcttatcttgtgcatgggactcctctgctttgtcagcaattggttcaccatatatgagataaactgttatcttcttcacaatgaaacggtactgaaa 395  Q
    ||||||||| | |||||||| | | ||||  ||| ||| | ||||||||| |||||||||||||||||| | ||||| |||||||||||| ||    |||    
T  4122595 cattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaa 4122694  T
Q  396 aacagcagcaacctcaactttgttaccaggttc 428  Q
    |||| || ||| ||| ||||||| |||||||||    
T  4122695 aacaacaacaatctccactttgtcaccaggttc 4122727  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 4132608 - 4132658
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatgaaac 385  Q
    ||||||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  4132608 caattggttcatcatatatgagataaactgctgtcttcatcacaatgaaac 4132658  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 4346668 - 4346621
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatga 382  Q
    ||||||||||| |||||||||||||||||| | ||||| |||||||||    
T  4346668 caattggttcatcatatatgagataaactgctgtcttcgtcacaatga 4346621  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 382
Target Start/End: Complemental strand, 4362857 - 4362810
Alignment:
Q  335 caattggttcaccatatatgagataaactgttatcttcttcacaatga 382  Q
    ||||||||||| |||||||||||||||||| | ||||| |||||||||    
T  4362857 caattggttcatcatatatgagataaactgctgtcttcgtcacaatga 4362810  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Original strand, 4319296 - 4319342
Alignment:
Q  339 tggttcaccatatatgagataaactgttatcttcttcacaatgaaac 385  Q
    ||||||| |||||||||||||||||| | ||||| ||||||||||||    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaac 4319342  T

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Target: scaffold1476 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 87 - 43
Alignment:
Q  395 aaacagcagcaacctcaactttgttaccaggttctagacttgata 439  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||||    
T  87 aaacaacagcaacctccactttattaccaggttctatacttgata 43  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 439
Target Start/End: Original strand, 22583352 - 22583396
Alignment:
Q  395 aaacagcagcaacctcaactttgttaccaggttctagacttgata 439  Q
    ||||| |||||||||| ||||| ||||||||||||| ||||||||    
T  22583352 aaacaacagcaacctccactttattaccaggttctatacttgata 22583396  T

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