View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104R-Insertion-5 (Length: 326)
Name: NF3104R-Insertion-5
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104R-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 55978445 - 55978235
Alignment:
| Q |
116 |
ataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca |
215 |
Q |
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| T |
55978445 |
ataggcattactaccacttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca |
55978346 |
T |
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| Q |
216 |
tttccatagaagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgtcaacaccataact |
315 |
Q |
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| T |
55978345 |
tttccatagaagcatttaaactcaaactcgcgtttgtgtactttgcaaaagaaacaccttctttagaatactctttgaaagtgttgtcaacaccataacc |
55978246 |
T |
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| Q |
316 |
cttaaaatcaa |
326 |
Q |
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||||||||||| |
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| T |
55978245 |
cttaaaatcaa |
55978235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 55980122 - 55980013
Alignment:
| Q |
15 |
accccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatatcagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55980122 |
accccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaagaatactctggggtaaaaacgaccttttaggtaatttatctctgatatcagg |
55980023 |
T |
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| Q |
115 |
cataggcatt |
124 |
Q |
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| T |
55980022 |
cataggcatt |
55980013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 14866223 - 14865939
Alignment:
| Q |
11 |
aataaccccttcatctcatcaatctttgaagtagaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatat |
110 |
Q |
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|||| ||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14866223 |
aatagccccttcatctcatcaatcttggatgtagaaaacggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctaatat |
14866124 |
T |
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| Q |
111 |
caggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctt |
210 |
Q |
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| T |
14866123 |
caggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccactcgcagcattttt |
14866024 |
T |
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| Q |
211 |
tttcatttccatagaagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaa |
295 |
Q |
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| T |
14866023 |
gttcactttcacagaagcacttaaactcgaactcacgtttgtgtactttgcaaaagaaacaccttccttcgaatactctttgaaa |
14865939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 27079595 - 27079719
Alignment:
| Q |
74 |
ggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaa |
173 |
Q |
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||||||||||||||| ||||||||||| | ||||| ||||||||||| || ||||||| ||||||||| ||||| || ||||||||||| |||| || |
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| T |
27079595 |
ggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaa |
27079694 |
T |
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| Q |
174 |
ccgatgttttgaccaaactaccact |
198 |
Q |
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|| || |||| |||||||| |||| |
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| T |
27079695 |
cccatttttttgccaaactaacact |
27079719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 27065881 - 27065979
Alignment:
| Q |
77 |
aaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaacc |
175 |
Q |
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|||||||||||| ||||||||||| || ||||| ||||||||||| ||| |||||| |||||||| || ||||| ||||||||||| |||| |||| |
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| T |
27065881 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaacc |
27065979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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