View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104R-Insertion-6 (Length: 303)
Name: NF3104R-Insertion-6
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104R-Insertion-6 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 36986435 - 36986731
Alignment:
| Q |
9 |
acaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatacgcacactgtttttgaaca |
108 |
Q |
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| T |
36986435 |
acaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatactcacactgtttttgaaca |
36986534 |
T |
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| Q |
109 |
ttttcaacatatatttatggctattactcatgcatacaagggagaagataattcaatctgaagacatatactttagagtagggtggtatcattaagtttc |
208 |
Q |
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| T |
36986535 |
ttttcaacatatatttatggctattactcatgcatacaagggagaagataattcaatctgaagacatatactttagagtagggtggtatcattaagtttc |
36986634 |
T |
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| Q |
209 |
ttact--caggtagaaaataaaatatgttcttttcatttcctacaaatagcaaattttagaatttctgagccatttttggtcgctcacatttgtcac |
303 |
Q |
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| T |
36986635 |
ttactcacaggtagaaaataaaatatgttcttttcatttcctacaaatagcaaactttagaatttctgagccatttttcgtcgctcacatttgtcac |
36986731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 36980742 - 36980913
Alignment:
| Q |
9 |
acaggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatacgcacactgtttttgaaca |
108 |
Q |
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| T |
36980742 |
acaggaatatcctgcaacatccaaatataagcatagagaccaagtacttcatacaagcaacccaatataattggaacaataaaca-----ttttcgaaca |
36980836 |
T |
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| Q |
109 |
ttttcaacatatatttatgg---ctattactcatgcatac-aagggagaagataattcaatctgaagacatatactt |
181 |
Q |
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| T |
36980837 |
ttttcaacatatatctaaggttattattactcatgcatacaaagggagaaaataattcaatctgaagatctatactt |
36980913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 36985281 - 36985330
Alignment:
| Q |
9 |
acaggaatatcctgcaacatccaagtattagcatagagaccaagtacttc |
58 |
Q |
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| T |
36985281 |
acaggaatatcctgcaacatccaaataatagcatagagactaagtacttc |
36985330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 36984641 - 36984742
Alignment:
| Q |
15 |
atatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaacca-atataatcggaggaatacgcacactgtttttgaacattttc |
113 |
Q |
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| T |
36984641 |
atatcctgccacctccaaatattagcatagagactaaatacttcatgcaagccaacccgatataattggaagaatacacat----tttttgaacattttc |
36984736 |
T |
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| Q |
114 |
aacata |
119 |
Q |
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|||||| |
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| T |
36984737 |
aacata |
36984742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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