View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3104R-Insertion-7 (Length: 262)

Name: NF3104R-Insertion-7
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3104R-Insertion-7
NF3104R-Insertion-7
[»] chr2 (5 HSPs)
chr2 (28-262)||(39822951-39823185)
chr2 (114-209)||(39914852-39914947)
chr2 (114-211)||(39907877-39907972)
chr2 (32-112)||(18058765-18058845)
chr2 (32-105)||(25628873-25628946)
[»] chr8 (6 HSPs)
chr8 (32-111)||(29525928-29526007)
chr8 (32-109)||(9305291-9305368)
chr8 (32-108)||(30233862-30233937)
chr8 (34-110)||(41775003-41775080)
chr8 (32-108)||(35162986-35163062)
chr8 (32-73)||(36675674-36675715)
[»] chr1 (5 HSPs)
chr1 (32-107)||(43824194-43824269)
chr1 (32-108)||(47459173-47459249)
chr1 (32-105)||(19563357-19563430)
chr1 (44-107)||(37028555-37028618)
chr1 (32-105)||(36384378-36384450)
[»] chr5 (5 HSPs)
chr5 (32-108)||(38089036-38089112)
chr5 (32-111)||(43146405-43146484)
chr5 (32-110)||(29668576-29668653)
chr5 (32-111)||(2134811-2134890)
chr5 (32-108)||(20256896-20256971)
[»] chr3 (4 HSPs)
chr3 (32-110)||(35637278-35637356)
chr3 (32-108)||(2663223-2663298)
chr3 (32-91)||(49323236-49323295)
chr3 (50-108)||(28212599-28212657)
[»] chr7 (2 HSPs)
chr7 (32-110)||(48065060-48065137)
chr7 (32-110)||(24879140-24879218)
[»] chr4 (2 HSPs)
chr4 (32-73)||(50470036-50470077)
chr4 (32-108)||(31799336-31799412)
[»] chr6 (1 HSPs)
chr6 (40-108)||(21508437-21508505)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 28 - 262
Target Start/End: Original strand, 39822951 - 39823185
Alignment:
Q  28 aaatttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctttcattatttaaatccac 127  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  39822951 aaatttaataacatgtgtcatatttttattggttgggtgtaagaatgatgtgttgggtgagagttgatgcaataatatctctttctttatttaaatccac 39823050  T
Q  128 ccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcatgcacaatgtctccgtcgtaactggtgacactgc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39823051 ccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcacgcacaatgtctccgtcgtaactggtgacactgc 39823150  T
Q  228 aggtacaggcgtgggatgcatacatctcctcttca 262  Q
    |||||||||||||||||||||||||||||||||||    
T  39823151 aggtacaggcgtgggatgcatacatctcctcttca 39823185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 114 - 209
Target Start/End: Original strand, 39914852 - 39914947
Alignment:
Q  114 ttatttaaatccacccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcatgcacaatgtctccgt 209  Q
    |||||||||||||||| ||||||| ||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  39914852 ttatttaaatccacccacacaaaaaattcaattctccttttcacccaaaccctctctccatatcgtaactgtttccatcaggcacaatgtctccgt 39914947  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 39907877 - 39907972
Alignment:
Q  114 ttatttaaatccacccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcatgcacaatgtctccgtcg 211  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||    
T  39907877 ttatttaaatccaccagcagaaaagattcaattctcctcttcacccaaacc--ctctctgtatcgtaactgtttccatcatgcacaatgtctccgtcg 39907972  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 18058845 - 18058765
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctttc 112  Q
    |||||||||||||||||||||||||| ||    ||||||||| || ||||  ||||||||| |||||| ||||||||||||    
T  18058845 ttaataacatgtgtcatatttttattagtcaagtgtaagaataatgtgttgggtgagagttcatgcaagaatatctctttc 18058765  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 25628946 - 25628873
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatat 105  Q
    ||||||| |||| ||||||||||||||||||| ||||| ||| || ||||  ||||||||| |||||| |||||    
T  25628946 ttaataatatgtatcatatttttattggttgggtgtaaaaataatgtgttgggtgagagttcatgcaagaatat 25628873  T

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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 29525928 - 29526007
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctcttt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||  ||||||||| |||||| |||||||||||    
T  29525928 ttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgtttggtgagagttcatgcaagaatatctcttt 29526007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 9305291 - 9305368
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctct 109  Q
    |||||||||||||||||||||||||||||||  ||||||||| || ||||  ||||||||  ||||||||||||||||    
T  9305291 ttaataacatgtgtcatatttttattggttgagtgtaagaataatgtgttgggtgagagtccatgcaataatatctct 9305368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 30233862 - 30233937
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||  ||||||||| |||||| ||||||||    
T  30233862 ttaataacatgtgtcat-tttttattggttgggtgtaagaatgatgtgttaggtgagagttcatgcaagaatatctc 30233937  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 41775003 - 41775080
Alignment:
Q  34 aataacatgtgtcatattttt-attggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctt 110  Q
    ||||||||||||||| ||||| ||| ||||||||||| |||||| ||||  ||||||||| |||||| ||||||||||    
T  41775003 aataacatgtgtcattttttttatttgttggatgtaaaaatgatgtgttgggtgagagttcatgcaagaatatctctt 41775080  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 35163062 - 35162986
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    ||||||||||||||||||||||||||||| || ||||||||| || ||||    ||||||| |||||| ||||||||    
T  35163062 ttaataacatgtgtcatatttttattggtcgggtgtaagaataatgtgttggaagagagttcatgcaagaatatctc 35162986  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 36675715 - 36675674
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaat 73  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  36675715 ttaataatatgtgtcatatttttattggttgggtgtaagaat 36675674  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 43824269 - 43824194
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatct 107  Q
    ||||||||||||||||| |||||||||||||| |||||||||||| ||||  |||||||||||||||| |||||||    
T  43824269 ttaataacatgtgtcatttttttattggttgggtgtaagaatgatgtgttgagtgagagttgatgcaagaatatct 43824194  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 47459173 - 47459249
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    ||||||||||||||||| |||||||||||||||||||||||| || ||||  |||||| |||||| || ||||||||    
T  47459173 ttaataacatgtgtcatttttttattggttggatgtaagaataatgtgttaggtgagaattgatgtaagaatatctc 47459249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 19563430 - 19563357
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatat 105  Q
    ||||||| |||||||||||||||||||||||| |||||||||||| | ||  ||||||||| |||||| |||||    
T  19563430 ttaataatatgtgtcatatttttattggttgggtgtaagaatgatgtcttgggtgagagtttatgcaagaatat 19563357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 37028618 - 37028555
Alignment:
Q  44 gtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatct 107  Q
    ||||| |||||||||||||| |||||||||||| | ||| |||||||||||||||| |||||||    
T  37028618 gtcatttttttattggttgggtgtaagaatgatgtattcggtgagagttgatgcaagaatatct 37028555  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 36384378 - 36384450
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatat 105  Q
    |||||||||| ||| || |||||||||||||| |||||||||||| ||||  ||||||||| || ||| |||||    
T  36384378 ttaataacatatgttat-tttttattggttgggtgtaagaatgatgtgttgggtgagagttcatacaaaaatat 36384450  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 38089036 - 38089112
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||   ||||||||||||||| ||||||||    
T  38089036 ttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttggatgagagttgatgcaagaatatctc 38089112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 43146405 - 43146484
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctcttt 111  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||  ||||||||| ||| || |||||||||||    
T  43146405 ttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttgggtgagagttcatgtaagaatatctcttt 43146484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 29668576 - 29668653
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctt 110  Q
    |||| ||||||||||||||||||||||||||||||||||||| || ||||  ||||||||| |||||| ||||||||||    
T  29668576 ttaacaacatgtgtcatatttttattggttggatgtaagaataatgtgtt-ggtgagagttcatgcaagaatatctctt 29668653  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 2134811 - 2134890
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctcttt 111  Q
    |||| |||||||||||| |||||||||||| | ||||| |||||| ||||   |||||||| |||||| |||||||||||    
T  2134811 ttaagaacatgtgtcatttttttattggtttggtgtaacaatgatgtgttggctgagagttcatgcaagaatatctcttt 2134890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 20256971 - 20256896
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    |||||||||||||||||||||||||| ||||| ||||||||  || ||||   |||||||| |||||| ||||||||    
T  20256971 ttaataacatgtgtcatatttttatt-gttgggtgtaagaaaaatgtgttggatgagagtttatgcaagaatatctc 20256896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 35637278 - 35637356
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctt 110  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||  ||||||||| |||||| || |||||||    
T  35637278 ttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgttgggtgagagttcatgcaagaaaatctctt 35637356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 2663298 - 2663223
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    |||||||||| |||||| |||||||||||| | |||||||||||| ||||  ||||||||| || ||| ||||||||    
T  2663298 ttaataacatatgtcat-tttttattggtttggtgtaagaatgatgtgttgagtgagagttcatacaagaatatctc 2663223  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 49323236 - 49323295
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagt 91  Q
    |||| |||||||||||| |||||||||||| | |||||||||||| ||||  ||||||||    
T  49323236 ttaacaacatgtgtcatctttttattggttaggtgtaagaatgatgtgttgagtgagagt 49323295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 28212657 - 28212599
Alignment:
Q  50 tttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    |||||||||||||| |||||||||||| ||||   |||||||| |||||| ||||||||    
T  28212657 tttttattggttgggtgtaagaatgatgtgttggatgagagtttatgcaagaatatctc 28212599  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 48065060 - 48065137
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctt 110  Q
    |||||||||||||||||||||||||||||||| ||||||||| || ||||   |||||||| |||||| ||||||||||    
T  48065060 ttaataacatgtgtcatatttttattggttgggtgtaagaataatgtgtt-gatgagagttcatgcaaaaatatctctt 48065137  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 24879140 - 24879218
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctctt 110  Q
    |||||||||| |||||||||||||||| | || ||||||||| || ||||  ||||||||| |||||| ||||||||||    
T  24879140 ttaataacatatgtcatatttttattgatcgggtgtaagaataatgtgttgggtgagagttcatgcaagaatatctctt 24879218  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 50470077 - 50470036
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaat 73  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50470077 ttaataacatgtgtcatatttttattggttggatgtaagaat 50470036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 31799336 - 31799412
Alignment:
Q  32 ttaataacatgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    ||||||||||||||||| ||||||||| |||  | |||||||||| ||||  ||||||||| |||||| || |||||    
T  31799336 ttaataacatgtgtcatttttttattgattgagtataagaatgatgtgtttggtgagagttcatgcaagaaaatctc 31799412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 21508505 - 21508437
Alignment:
Q  40 atgtgtcatatttttattggttggatgtaagaatgatatgttccgtgagagttgatgcaataatatctc 108  Q
    |||||||||||||||||||||||  ||||||||| |||||||  || |||||| |||||| || |||||    
T  21508505 atgtgtcatatttttattggttgcgtgtaagaataatatgttgggtaagagttcatgcaagaacatctc 21508437  T

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