View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3104R-Insertion-8 (Length: 234)
Name: NF3104R-Insertion-8
Description: NF3104R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104R-Insertion-8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 38710566 - 38710340
Alignment:
| Q |
8 |
actacacactaggaatgagttgtataatgcctccaatatttcatataagattactctctctccttcaaagaaccattttttattaccacacatatggtta |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710566 |
actacacactaggaatgagttgtataatgcctccaatatttcttataagattactctctctccttcaaagaaccattttttattaccacacatatggtta |
38710467 |
T |
|
| Q |
108 |
ctacaacctaagtccaagaaccatgccttcttctttgaaattgctttatctcgttgttggataattgtcttcctctgccacacccctttatcttccatca |
207 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38710466 |
ctacaacctaagtccaagaactatgccttcttctttgaaattgctttatctcgttgttggataattgtcttcctctgccacacccctttatcttccatca |
38710367 |
T |
|
| Q |
208 |
tatgtgattttcaaagcatgttcctct |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38710366 |
tatgtgattttcaaagcatgttcctct |
38710340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University