View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_high_5 (Length: 408)
Name: NF3104_high_5
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Original strand, 55329287 - 55329678
Alignment:
| Q |
15 |
acttatgtccaaaaaggttggatgctacagtccctcttccaattctctctggcgtactggtggatttctcaccaacagcaacagtcccaagaagtttcga |
114 |
Q |
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| T |
55329287 |
acttatgtccaaaaaggttggatgctacagtccctcttccaattctctctggcgtactggtggatttctcaccaacagcaacagtcccaagaagtttcga |
55329386 |
T |
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| Q |
115 |
tctcgcaacaagaaactttgcttcggtcccactcagcctcccgattgcatcgtcattgtcgataccgagagcaagtcttctgttattgacgaggctttca |
214 |
Q |
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| T |
55329387 |
tctcgcaacaagaaactttgcttcggtcccactcagcctcccgattgcatcgtcattgtcgatactgagagcaagtcttctgttattgacgaggctttca |
55329486 |
T |
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| Q |
215 |
aacttcacattccaattgtcgctcttgttgattctgctatgcctctccatactttcagccgcattgcttatcccattcccgttaacccctctgttcaatt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55329487 |
aacttcacattccaattgtcgctcttgttgattctgctatgcctctccatactttcagccgcattgcttatcccattcccgttaacccctctgttcaatt |
55329586 |
T |
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| Q |
315 |
tgtctatcttttctgtaatttgattaccaaaacactgcttctcgagaag------aagaacaacaactctaatatcaaacttcttgatgatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
55329587 |
tgtctatcttttctgtaatttgattaccaaaacactgcttctcgagaagaacaacaacaacaacaactctaatatcaaacttcttgatgatg |
55329678 |
T |
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