View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_1 (Length: 551)
Name: NF3104_low_1
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 106 - 535
Target Start/End: Complemental strand, 20755633 - 20755219
Alignment:
| Q |
106 |
caattaagaaatattcttgaagaaattagtctttgtagttgtttgaggatactctaaaaaatattgctagaaggagaaatatgcaatggtattatgtcaa |
205 |
Q |
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| T |
20755633 |
caattaagaaatattcttgaagaaattagtctatgtagttgtttgaggatactctaaaaaatattgctagaaggagaaatgtgcaatggtattatgtcaa |
20755534 |
T |
|
| Q |
206 |
ttaatttattagcaattttattcttct--tggtatannnnnnnnnngttggtgattcttctcttagtatttcttttcctagttatacatatgtgtatgtc |
303 |
Q |
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| T |
20755533 |
ttaatttattagcaattttattcttctcttagtatatttttttt--gttggtgattcttctcttagtatttcttttcctagttatacatttgtgtatgtc |
20755436 |
T |
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| Q |
304 |
attacttcttttatttttgacaaacttgtgtttaagtagttaggaacaaacttgtttttgacaacattcaattatagagatggttaacataagtgaagtg |
403 |
Q |
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| T |
20755435 |
attacttcttttatttttgacaaacttgtgtttgagtagttaggaacaaacttgtttttaacaaccttcaattatagagatgg-taacataagtgaagtg |
20755337 |
T |
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| Q |
404 |
aatctaaaataaaggttcaagaagaaggatctttttctatgattcaatttaatttttccaatcaatttttcaagatctaaccctaaaaggagattcgaaa |
503 |
Q |
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| T |
20755336 |
aatctaagat--------------aaggatctttttctatgattcaatttaatttttccaaacaatttttcaagatctaaccctaaaaggagattcgaaa |
20755251 |
T |
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| Q |
504 |
agccccttgataaaggttcacatggttcaacc |
535 |
Q |
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| T |
20755250 |
agccccttgataaaggttcacatggttcaacc |
20755219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 20755698 - 20755634
Alignment:
| Q |
7 |
aatatggaacaactactagctcttt-aattgttaaatagtactaaattagtcccttcaattcctt |
70 |
Q |
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| T |
20755698 |
aatatggaacaactactagctctttgaattgttaaatagtattaaactagtcccttcaattcctt |
20755634 |
T |
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