View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_10 (Length: 395)
Name: NF3104_low_10
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 10153942 - 10153569
Alignment:
| Q |
14 |
ctattaacctcaaatggcagccacaaatcctccattgaagcctttggagcctcacacaatctatcattttcctcaaagaaatcaataccagaagaaacct |
113 |
Q |
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| T |
10153942 |
ctattaacctcaaatggcagccacaaatcctccattgaagcctttggagcctcacacaatctatcattttcctcaaagaaatcaataccagaagaaacct |
10153843 |
T |
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| Q |
114 |
tgaaacaagtgttgtcttggtcttgtaatgatgacaagaaattgtcttcaaaatcaattaaacaatcttctaatttgtatatgacaccatctttcaacca |
213 |
Q |
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| T |
10153842 |
tgaaacaagtgttgtcttggtcttgtaatgatgacaagaaattgtcttcaaaatcaattaaacaatcttctaatttgtatatgacaccatctttcaacca |
10153743 |
T |
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| Q |
214 |
agggaaatcaaacactccaaatgctaaacaacctttctcttccacttcattcttttccttggtgaaacttgtgccacatacatctcnnnnnnnagctttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10153742 |
agggaaatcaaacactccaaatgctaaacaacctttctcttccacttcattcttttccttggtgaaacttgtgccacatacatctctttttttagctttc |
10153643 |
T |
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| Q |
314 |
ttgttattattctcaaaagaaaaccaaatcttagcttcaatatcatcatattctcttgctctcttattcttctc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10153642 |
ttgttattattctcaaaagaaaaccaaatcttagcttcaatatcatcatattctcttgctctcttattcttctc |
10153569 |
T |
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