View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_11 (Length: 383)
Name: NF3104_low_11
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 49 - 376
Target Start/End: Complemental strand, 8796252 - 8795925
Alignment:
| Q |
49 |
ttcttaattagtctttttcaataatattttatattgctagcttgtactctttttaatcttctttgcctaaataagtgagttcctaatacttgctaccaaa |
148 |
Q |
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| T |
8796252 |
ttcttaattagtctttttcaatagtattttatattgctagcttgtactctttttaatcttctttgcctaaataagtgagttcctaatacttgctaccaaa |
8796153 |
T |
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| Q |
149 |
ggtgcccttaactcatgcgttttttgtctaaaaataaaggtagatggtgatgtatagtagtacatatatatttcattggtgttggtgcattgaaggaact |
248 |
Q |
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| T |
8796152 |
ggtgcccttaactcatgcgttttttgtctaaaaataaaggtagatggtgatgtatagtagtacatatatatttcattggtgttggtgcattgaaggaact |
8796053 |
T |
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| Q |
249 |
taactatataggtatcttgttaaattcgtcttttcttttgtgtgtgcttgatagtattgtttttatgggaactataagacttgcatcatcacacatatag |
348 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8796052 |
taactatataggtatcttgttaaattcgtcttttcttgtgtgtgtgcttgatagtattgtttttatgggaactataagacttgcatcatcacacatatag |
8795953 |
T |
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| Q |
349 |
ctttttcttaaaatttcccttttgatga |
376 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
8795952 |
ctttttcttaaaatttcccttttgatga |
8795925 |
T |
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