View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_12 (Length: 355)
Name: NF3104_low_12
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 77 - 338
Target Start/End: Original strand, 3248999 - 3249260
Alignment:
| Q |
77 |
ttgatttcatcccaaaaagaggattagaaatcacaacatcatcctcattttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaag |
176 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248999 |
ttgagttcatcccaaaaagaggattagaaatcacaacatcatcctcatcttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaag |
3249098 |
T |
|
| Q |
177 |
tcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249099 |
tcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatc |
3249198 |
T |
|
| Q |
277 |
ttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagatt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249199 |
ttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagatt |
3249260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 112 - 338
Target Start/End: Complemental strand, 36905596 - 36905370
Alignment:
| Q |
112 |
acatcatcctcattttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgt |
211 |
Q |
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||||||||||||||| ||||||||||||| || |||||| |||||| ||||||||||||||||| |||||||| |||||| ||| ||||||||||||| |
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| T |
36905596 |
acatcatcctcatttccttcctcatgcaagttacctgtgttatgtaggtcattcaagcttccaagacgtaaatgagaatcagaggaattggttatgttgt |
36905497 |
T |
|
| Q |
212 |
gtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttcttt |
311 |
Q |
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||||||||||||||||||||| ||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||| |
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| T |
36905496 |
gtagttcagtagcagcctgtttagattgtgcattttcagtattggtggtttcaaggtcgaaaatcttaacaggggagttcacaaactcagcaatatcttt |
36905397 |
T |
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| Q |
312 |
atgcatcaaatcagtgccctttagatt |
338 |
Q |
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|||||||||||||| ||| | |||||| |
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| T |
36905396 |
atgcatcaaatcagagccatctagatt |
36905370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 36905722 - 36905621
Alignment:
| Q |
10 |
agatgaattgtactatcttcctgcaacctgtcaaaaggattatgtagagttaaagcagagggtgattttgatttcatcccaaaaagaggattagaaatca |
109 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
36905722 |
agatgaattgcactatcttcctgcaacctgttaaaaggattatgtagagttaaagcagagggtgattttgagttcatcccaaaaagaggatttgaaatca |
36905623 |
T |
|
| Q |
110 |
ca |
111 |
Q |
| |
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|| |
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|
| T |
36905622 |
ca |
36905621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 3248952 - 3248998
Alignment:
| Q |
9 |
gagatgaattgtactatcttcctgcaacctgtcaaaaggattatgta |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3248952 |
gagatgaattgtactatcttcctgcaacctgtcaaaagtattatgta |
3248998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 128 - 338
Target Start/End: Original strand, 28102423 - 28102633
Alignment:
| Q |
128 |
cttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagc |
227 |
Q |
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||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28102423 |
cttcctcatgcaagtactcggtgtcatgtaggtcattcaagcttccaagtcgtaaatgagaatcaggggagttggttatgttgtgtagttcagtagcagc |
28102522 |
T |
|
| Q |
228 |
ctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtg |
327 |
Q |
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||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
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| T |
28102523 |
ctgttcagattgtgtattttcattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtttctttatgcatcaaatcagag |
28102622 |
T |
|
| Q |
328 |
ccctttagatt |
338 |
Q |
| |
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|| | |||||| |
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| T |
28102623 |
ccatctagatt |
28102633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 28102281 - 28102382
Alignment:
| Q |
10 |
agatgaattgtactatcttcctgcaacctgtcaaaaggattatgtagagttaaagcagagggtgattttgatttcatcccaaaaagaggattagaaatca |
109 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
28102281 |
agatgaattgcactatcttcctgcaacccatcaaaaggattatgtagagttaaagcagagggtgattttgagttcatcccaaaaagaggatttaaaatca |
28102380 |
T |
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| Q |
110 |
ca |
111 |
Q |
| |
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|| |
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|
| T |
28102381 |
ca |
28102382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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