View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3104_low_14 (Length: 323)
Name: NF3104_low_14
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 55711717 - 55712031
Alignment:
| Q |
1 |
cattcattgtcaatcaaggttggtagaaaaaatcacaacttgtgatagtagtagtacattttttattttaatgcattgcttaaatgttgaatctactcat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55711717 |
cattcactgtcaatcaaggttggtagaaaaaatcacaacttgtgatagtagtagtacattttttattttaatgcattgcttaaatgttgaatctactcat |
55711816 |
T |
|
| Q |
101 |
gtacttattacatttactcaattgtttaaatgttcaatctgcaggagtgcaggtaagacatatggattcagaatatcaaatgtggggctcgtagcatcca |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55711817 |
atacttattacatttacacaattgtttaaatgttcaatctgcaggagtgcaggtaagacatatggattcagaatatcaaatgtggggctcgcagcatcca |
55711916 |
T |
|
| Q |
201 |
tcaacttcataatccaaggacactcattgaaacttgtggaagtagaaggatctcataccctccaaaacacttattcttcactcgacatccatatcggaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55711917 |
tcaacttcataatccaaggacactcattgaaacttgtggaagtagaaggatctcataccctccaaaacacttattcttcactcgacatccatatcggaca |
55712016 |
T |
|
| Q |
301 |
gtcctattctgtgct |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
55712017 |
gtcctattctgtgct |
55712031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 148 - 315
Target Start/End: Original strand, 55295899 - 55296066
Alignment:
| Q |
148 |
tgcaggtaagacatatggattcagaatatcaaatgtggggctcgtagcatccatcaacttcataatccaaggacactcattgaaacttgtggaagtagaa |
247 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55295899 |
tgcaggtaagacatatagattcagaatatcaaatgttgggctcgcaacatccatcaacttcagaatccaaggacactcattgaaacttgtagaagtagaa |
55295998 |
T |
|
| Q |
248 |
ggatctcataccctccaaaacacttattcttcactcgacatccatatcggacagtcctattctgtgct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
55295999 |
ggatctcataccctccaaaacacttattcttcactcgacatccatctcgggcagtcctattctgtgct |
55296066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 55295784 - 55295871
Alignment:
| Q |
1 |
cattcattgtcaatcaaggttggtagaaaaaatcacaacttgtgatagtagtagta---cattttttattttaatgcattgcttaaatgttg |
89 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
55295784 |
cattcactgtcgatcaaggttggtagaaaaaat---aacttgtgatagtagtagtagtacattttg-attttaatgcattgcttaaatgttg |
55295871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University