View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3104_low_17 (Length: 291)

Name: NF3104_low_17
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3104_low_17
NF3104_low_17
[»] chr2 (6 HSPs)
chr2 (49-272)||(1355983-1356212)
chr2 (68-131)||(532157-532221)
chr2 (163-199)||(1362856-1362892)
chr2 (53-89)||(5095807-5095843)
chr2 (57-120)||(18182498-18182562)
chr2 (68-122)||(3094282-3094337)
[»] chr6 (2 HSPs)
chr6 (53-126)||(28606565-28606639)
chr6 (49-120)||(15057105-15057177)
[»] chr3 (5 HSPs)
chr3 (53-123)||(26960932-26961003)
chr3 (53-104)||(53299822-53299873)
chr3 (66-104)||(53299719-53299757)
chr3 (68-105)||(30675008-30675045)
chr3 (53-85)||(48342310-48342342)
[»] chr5 (3 HSPs)
chr5 (53-104)||(5998542-5998593)
chr5 (50-104)||(34394678-34394732)
chr5 (53-129)||(20986548-20986625)
[»] chr8 (2 HSPs)
chr8 (52-120)||(3647478-3647547)
chr8 (53-89)||(10591487-10591523)
[»] chr4 (5 HSPs)
chr4 (53-133)||(29821311-29821392)
chr4 (68-113)||(13837849-13837895)
chr4 (68-120)||(13837989-13838042)
chr4 (53-89)||(11392392-11392428)
chr4 (53-116)||(35297469-35297533)
[»] chr7 (8 HSPs)
chr7 (49-104)||(16648905-16648960)
chr7 (49-104)||(17623266-17623321)
chr7 (65-104)||(33491196-33491235)
chr7 (49-126)||(16648783-16648861)
chr7 (49-126)||(17623144-17623222)
chr7 (68-104)||(6980966-6981002)
chr7 (53-89)||(32315735-32315771)
chr7 (70-114)||(48583288-48583332)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 49 - 272
Target Start/End: Original strand, 1355983 - 1356212
Alignment:
Q  49 gtcattttgtacatttatgacattgtggttggccaatgtc---agatgacattgacacca-aatgtcacctaagtgttttccgaaaatttgttggtgggt 144  Q
    ||||||||||||| || |||||||||||||||||||||||   ||||||||||||||||  ||||||||| || |||||||||||||| |||||||||||    
T  1355983 gtcattttgtacacttgtgacattgtggttggccaatgtcgtcagatgacattgacaccccaatgtcacccaaatgttttccgaaaatgtgttggtgggt 1356082  T
Q  145 agaagaaattctaatctgtaactatgctattttgtatttaattcttggattcatgaatgt--nnnnnnnnntattactaaggtaggaaatttacctctta 242  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||           ||||||||||| || ||||||||||||||    
T  1356083 agaagaaattctaatctctacctatgctattttgtatttaattcttggattcatgaatgtaaaaaaaaaaatattactaaggaagaaaatttacctctta 1356182  T
Q  243 gttagatggcaaaagatgctcttaatattc 272  Q
    ||||||||||||||||||||||||||||||    
T  1356183 gttagatggcaaaagatgctcttaatattc 1356212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 532221 - 532157
Alignment:
Q  68 acattgtggttggccaatgtcagatgacattgacacca-aatgtcacctaagtgttttccgaaaa 131  Q
    |||||||||||||||||||||| ||||||||| |||||  |||||||| ||||||| ||| ||||    
T  532221 acattgtggttggccaatgtcacatgacattggcaccaccatgtcacccaagtgttgtcccaaaa 532157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 1362856 - 1362892
Alignment:
Q  163 taactatgctattttgtatttaattcttggattcatg 199  Q
    ||||||||||||||||||| |||||||||||||||||    
T  1362856 taactatgctattttgtatataattcttggattcatg 1362892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 5095807 - 5095843
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtca 89  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5095807 ttttgtacatttgtgacattgtggttggccaatgtca 5095843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 18182562 - 18182498
Alignment:
Q  57 gtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtg 120  Q
    ||||| || |||||||||||||||||||||||| ||||||||| || || ||||||||| |||||    
T  18182562 gtacacttgtgacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 18182498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 3094282 - 3094337
Alignment:
Q  68 acattgtggttggccaatgtcagatgacattgacacca-aatgtcacctaagtgtt 122  Q
    ||||||| |||| ||||||||| ||||||||||||||| |||||| ||||||||||    
T  3094282 acattgtagttgaccaatgtcacatgacattgacaccacaatgtcgcctaagtgtt 3094337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 28606565 - 28606639
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtgttttcc 126  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||| || || ||||||||| |||||||||||    
T  28606565 ttttgtacacttaagacattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtgttttcc 28606639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 15057105 - 15057177
Alignment:
Q  49 gtcattttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtg 120  Q
    ||||||||||||| || ||| ||| |||||||||||||||| |||||||||||| || ||||||||| |||||    
T  15057105 gtcattttgtacacttgtgatattttggttggccaatgtcacatgacattgacaccccaatgtcaccaaagtg 15057177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 26960932 - 26961003
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgacacc-aaatgtcacctaagtgttt 123  Q
    |||| |||| || |||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||    
T  26960932 ttttctacacttgtgacattgtggttggccaatgtcacatgacattgacacctcaatgtcacccaagtgttt 26961003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 53299822 - 53299873
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    ||||||||| || ||||||||||||||||||||||||  |||||||||||||    
T  53299822 ttttgtacacttgtgacattgtggttggccaatgtcacgtgacattgacacc 53299873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 53299757 - 53299719
Alignment:
Q  66 tgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  53299757 tgacattgtggttggccaatgtcatgtgacattgacacc 53299719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 30675008 - 30675045
Alignment:
Q  68 acattgtggttggccaatgtcagatgacattgacacca 105  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  30675008 acattgtggttggctaatgtcacatgacattgacacca 30675045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 48342310 - 48342342
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaat 85  Q
    |||||||||||| ||||||||||||||||||||    
T  48342310 ttttgtacatttgtgacattgtggttggccaat 48342342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 5998593 - 5998542
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    ||||||||| || |||||||||||||| ||||||||| ||||||||||||||    
T  5998593 ttttgtacacttctgacattgtggttgaccaatgtcacatgacattgacacc 5998542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 34394732 - 34394678
Alignment:
Q  50 tcattttgtacatttatgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    |||||||||||| || |||||||||||||| ||||||||| || |||||| ||||    
T  34394732 tcattttgtacacttgtgacattgtggttgaccaatgtcacatcacattggcacc 34394678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 20986548 - 20986625
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtgttttccgaa 129  Q
    ||||| ||| |||||||||||| ||||| |||| ||| ||||||||| || || ||||||||| ||||||| ||||||    
T  20986548 ttttgcacacttatgacattgtagttggtcaatatcacatgacattggcatcccaatgtcaccaaagtgttatccgaa 20986625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 3647478 - 3647547
Alignment:
Q  52 attttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtg 120  Q
    |||||||||| || || ||||||||||||||||||||| ||||||||| || || ||||||||| |||||    
T  3647478 attttgtacacttgtgtcattgtggttggccaatgtcacatgacattggcaccccaatgtcacccaagtg 3647547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 10591523 - 10591487
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtca 89  Q
    |||| |||||||||||||||||||||||| |||||||    
T  10591523 ttttatacatttatgacattgtggttggctaatgtca 10591487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 133
Target Start/End: Complemental strand, 29821392 - 29821311
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtgttttccgaaaatt 133  Q
    ||||||||| || ||||||||||||||||||| |||  ||||||||| || || | ||||||| |||||||||||| |||||    
T  29821392 ttttgtacacttgtgacattgtggttggccaaggtcccatgacattggcaccccattgtcacccaagtgttttccgtaaatt 29821311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 13837895 - 13837849
Alignment:
Q  68 acattgtggttggccaatgtcagatgacattgacacca-aatgtcac 113  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||    
T  13837895 acattgtggttggccaatgtcacatgacattggcaccacaatgtcac 13837849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 13837989 - 13838042
Alignment:
Q  68 acattgtggttggccaatgtcagatgacattgacacca-aatgtcacctaagtg 120  Q
    |||||||||||| |||||||||||||||||||  |||| |||||||| ||||||    
T  13837989 acattgtggttgaccaatgtcagatgacattggaaccacaatgtcacataagtg 13838042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 11392392 - 11392428
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtca 89  Q
    ||||||||| || ||||||||||||||||||||||||    
T  11392392 ttttgtacacttgtgacattgtggttggccaatgtca 11392428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 35297533 - 35297469
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcaccta 116  Q
    ||||||||| || ||| ||||||||||| |||||||| ||| |||||| | ||||||||||||||    
T  35297533 ttttgtacacttgtgatattgtggttggtcaatgtcacatgtcattgaaacccaaatgtcaccta 35297469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 16648905 - 16648960
Alignment:
Q  49 gtcattttgtacatttatgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    ||||||||||||| || ||| ||||||||| |||||||||| ||||||||| ||||    
T  16648905 gtcattttgtacacttgtgaaattgtggtttgccaatgtcacatgacattggcacc 16648960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 17623266 - 17623321
Alignment:
Q  49 gtcattttgtacatttatgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    ||||||||||||| || ||| ||||||||| |||||||||| ||||||||| ||||    
T  17623266 gtcattttgtacacttgtgatattgtggtttgccaatgtcacatgacattggcacc 17623321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 33491235 - 33491196
Alignment:
Q  65 atgacattgtggttggccaatgtcagatgacattgacacc 104  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  33491235 atgacattgtggttggccaatgtcacatgacattggcacc 33491196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 16648861 - 16648783
Alignment:
Q  49 gtcattttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtgttttcc 126  Q
    |||||||| |||  || ||| |||||||||| ||||||||| |||||||||||| ||  |||||||| |||||||||||    
T  16648861 gtcattttatacgcttgtgatattgtggttgaccaatgtcacatgacattgacatcccgatgtcacccaagtgttttcc 16648783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 17623222 - 17623144
Alignment:
Q  49 gtcattttgtacatttatgacattgtggttggccaatgtcagatgacattgaca-ccaaatgtcacctaagtgttttcc 126  Q
    |||||||| |||  || ||| |||||||||| ||||||||| |||||||||||| ||  |||||||| |||||||||||    
T  17623222 gtcattttatacgcttgtgatattgtggttgaccaatgtcacatgacattgacatcccgatgtcacccaagtgttttcc 17623144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 6980966 - 6981002
Alignment:
Q  68 acattgtggttggccaatgtcagatgacattgacacc 104  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  6980966 acattgtggttggccaatgtcacatgacattggcacc 6981002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 32315771 - 32315735
Alignment:
Q  53 ttttgtacatttatgacattgtggttggccaatgtca 89  Q
    ||||||||| || ||||||||||||||||||||||||    
T  32315771 ttttgtacaattgtgacattgtggttggccaatgtca 32315735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 48583332 - 48583288
Alignment:
Q  70 attgtggttggccaatgtcagatgacattgacaccaaatgtcacc 114  Q
    |||||||||||||||||||| ||||||||| |||  |||||||||    
T  48583332 attgtggttggccaatgtcacatgacattggcacataatgtcacc 48583288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University