View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3104_low_19 (Length: 268)

Name: NF3104_low_19
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3104_low_19
NF3104_low_19
[»] chr3 (3 HSPs)
chr3 (19-267)||(36323011-36323256)
chr3 (73-234)||(36303048-36303209)
chr3 (207-259)||(50402571-50402623)
[»] chr2 (7 HSPs)
chr2 (209-262)||(38766707-38766760)
chr2 (207-263)||(29395964-29396020)
chr2 (199-258)||(18569503-18569562)
chr2 (198-259)||(1163343-1163404)
chr2 (198-259)||(1169410-1169471)
chr2 (73-109)||(28811273-28811308)
chr2 (207-259)||(38434200-38434252)
[»] scaffold0153 (2 HSPs)
scaffold0153 (199-259)||(16124-16184)
scaffold0153 (199-259)||(31381-31441)
[»] chr7 (3 HSPs)
chr7 (207-259)||(23117277-23117329)
chr7 (207-260)||(27720468-27720521)
chr7 (210-259)||(29505247-29505296)
[»] chr8 (3 HSPs)
chr8 (193-259)||(4050519-4050585)
chr8 (206-259)||(3644450-3644503)
chr8 (207-255)||(29263604-29263652)
[»] chr1 (2 HSPs)
chr1 (213-259)||(12764113-12764159)
chr1 (207-236)||(8344571-8344600)
[»] chr5 (3 HSPs)
chr5 (200-233)||(10125543-10125576)
chr5 (73-109)||(877738-877773)
chr5 (207-259)||(13510220-13510272)
[»] chr6 (3 HSPs)
chr6 (207-266)||(6012337-6012397)
chr6 (207-255)||(27616050-27616098)
chr6 (207-251)||(27832895-27832939)
[»] chr4 (1 HSPs)
chr4 (207-259)||(1099052-1099104)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 36323011 - 36323256
Alignment:
Q  19 atgtcaaatattggttttactccacagggacatatattatttagcttnnnnnnngtgttgtcaaatagcggctatagtgggtgctatagcatggaagaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    ||||||||||||||||||||    
T  36323011 atgtcaaatattggttttactccacagggacatatattatttagcttaaaacaagtgttgtcaaatagcggctataa---gtgctatagcatggaagaat 36323107  T
Q  119 tggaataaatcacttttgttccgcagtccgatattcagtacaaagtaaagttaaacaactagaattgtggcacgatatcgctgtagtttagcagaatttg 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36323108 tggaataaatcagttttgttccgcagtccgatattcagtacaaagtaaagttaaataactagaattgtggcacgatatcgctgtagtttagcagaatttg 36323207  T
Q  219 aacaaaccactatttttcgccatctgcgattgacaacactgcttaagac 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36323208 aacaaaccactatttttcgccatctgcgattgacaacactgcttaagac 36323256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 36303048 - 36303209
Alignment:
Q  73 gtgttgtcaaatagcggctatagtgggtgctatagcatggaagaattggaataaatcacttttgttccgcagtccgatattcagtacaaagtaaagttaa 172  Q
    ||||||| || ||| |||||||| ||| |||||||||||||||||||  |||| ||| |||||||||||||||| | |||| ||| ||||||   || ||    
T  36303048 gtgttgttaagtagtggctatagcgggcgctatagcatggaagaatttaaatatatcgcttttgttccgcagtctgctatttagttcaaagtgttgtcaa 36303147  T
Q  173 acaactagaattgtggcacgatatcgctgtagtttagcagaatttgaacaaaccactatttt 234  Q
    | | || |||| ||||  | ||| ||||||| | |||| ||||||||||||||| |||||||    
T  36303148 atagctggaatggtggtgctatagcgctgtactatagcggaatttgaacaaaccgctatttt 36303209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 50402623 - 50402571
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||||||| |||||||  ||||||||||| || |||||| |||||||||||||    
T  50402623 tagcagaaattgaacacgccactattttttgcgatctgcaattgacaacactg 50402571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 38766760 - 38766707
Alignment:
Q  209 gcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactgctt 262  Q
    |||||||||||||||||| ||||||| ||| |||||| ||||||||||||||||    
T  38766760 gcagaatttgaacaaaccgctattttacgcgatctgcaattgacaacactgctt 38766707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 29396020 - 29395964
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactgctta 263  Q
    ||||| |||||||||||||| |||||||| |  |||||| |||||||||||||||||    
T  29396020 tagcaaaatttgaacaaaccgctattttttgtgatctgcaattgacaacactgctta 29395964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 18569503 - 18569562
Alignment:
Q  199 ctgtagtttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacact 258  Q
    ||||||| |||||||||||||||||||| ||||||  ||| | ||| |||||||||||||    
T  18569503 ctgtagtgtagcagaatttgaacaaaccgctatttcccgcgacctgtgattgacaacact 18569562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 1163343 - 1163404
Alignment:
Q  198 gctgtagtttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||||||| ||||  ||||||||||| |||||||||| | |||||| | |||||||||||||    
T  1163343 gctgtagtgtagcgaaatttgaacaatccactattttccaccatctacaattgacaacactg 1163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 1169410 - 1169471
Alignment:
Q  198 gctgtagtttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||||||| |||  |||||||||||| |||||||||| | |||||| | |||||||||||||    
T  1169410 gctgtagtgtagtggaatttgaacaatccactattttccaccatctacaattgacaacactg 1169471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 28811273 - 28811308
Alignment:
Q  73 gtgttgtcaaatagcggctatagtgggtgctatagca 109  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28811273 gtgttgtcaaatagcggctatagt-ggtgctatagca 28811308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 38434200 - 38434252
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||||||||||||||||||  ||||||| ||   |||||||||||||||||||    
T  38434200 tagcagaatttgaacaaactgctattttccgtgttctgcgattgacaacactg 38434252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 16124 - 16184
Alignment:
Q  199 ctgtagtttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    ||||||| |||| |||||||||||| |||||||||| | |||||| | |||||||||||||    
T  16124 ctgtagtgtagcggaatttgaacaatccactattttccaccatctacaattgacaacactg 16184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 31381 - 31441
Alignment:
Q  199 ctgtagtttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    ||||||| |||| |||||||||||| |||||||||| | |||||| | |||||||||||||    
T  31381 ctgtagtgtagcggaatttgaacaatccactattttccaccatctacaattgacaacactg 31441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 23117329 - 23117277
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||| ||||||||||||||||||||||| ||| ||| || |||||||||||||    
T  23117329 tagcggaatttgaacaaaccactattttccgcaatccgcaattgacaacactg 23117277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 27720468 - 27720521
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactgc 260  Q
    |||||||||||||||||||||||||||| |   ||| || ||||||||||||||    
T  27720468 tagcagaatttgaacaaaccactattttccatgatccgcaattgacaacactgc 27720521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 29505247 - 29505296
Alignment:
Q  210 cagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||||||||| | ||| |||||||||||| ||||||| ||||||||||||    
T  29505247 cagaatttgagccaactactatttttcgcgatctgcggttgacaacactg 29505296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 259
Target Start/End: Original strand, 4050519 - 4050585
Alignment:
Q  193 atatcgctgtagtttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    ||||| |||| || || |||||||||||||||||||||||||| || ||| ||| || |||||||||    
T  4050519 atatcactgttgtgtaacagaatttgaacaaaccactatttttggcaatccgcggttaacaacactg 4050585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 3644503 - 3644450
Alignment:
Q  206 ttagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    ||||| ||||||||||||||| ||| |||| || |||||| |||||||||||||    
T  3644503 ttagcggaatttgaacaaaccgctactttttgcaatctgcaattgacaacactg 3644450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 29263652 - 29263604
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaac 255  Q
    |||||||||| |||||||||| ||||||| || |||| |||||||||||    
T  29263652 tagcagaattggaacaaaccaatattttttgcgatctacgattgacaac 29263604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 12764113 - 12764159
Alignment:
Q  213 aatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||||||| |||||| |||||||||| ||||| ||||||||||||||    
T  12764113 aatttgaaaaaaccaatatttttcgcgatctgtgattgacaacactg 12764159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 236
Target Start/End: Original strand, 8344571 - 8344600
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttc 236  Q
    ||||||||||||||||||||||||||||||    
T  8344571 tagcagaatttgaacaaaccactatttttc 8344600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 10125576 - 10125543
Alignment:
Q  200 tgtagtttagcagaatttgaacaaaccactattt 233  Q
    |||||| |||||||||||||||||||||||||||    
T  10125576 tgtagtgtagcagaatttgaacaaaccactattt 10125543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 877738 - 877773
Alignment:
Q  73 gtgttgtcaaatagcggctatagtgggtgctatagca 109  Q
    |||||||||||||||||||||||| ||||||||||||    
T  877738 gtgttgtcaaatagcggctatagt-ggtgctatagca 877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 13510272 - 13510220
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||| ||||||||||||||  |||||||  |||||||||| ||||||||||||    
T  13510272 tagctgaatttgaacaaactgctattttctgccatctgcgtttgacaacactg 13510220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 6012337 - 6012397
Alignment:
Q  207 tagcagaatttgaacaaac-cactatttttcgccatctgcgattgacaacactgcttaaga 266  Q
    |||||||||||||| |||| | ||||||| ||| ||| |||||||||||||||| ||||||    
T  6012337 tagcagaatttgaataaacgcgctattttccgcgatccgcgattgacaacactggttaaga 6012397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 27616098 - 27616050
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaac 255  Q
    |||||||||  |||||||||||||||||  || ||||||||||||||||    
T  27616098 tagcagaatcggaacaaaccactattttctgcgatctgcgattgacaac 27616050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 27832895 - 27832939
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattga 251  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  27832895 tagcggaattggaacaaaccactattttccgcaatctgcgattga 27832939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 1099104 - 1099052
Alignment:
Q  207 tagcagaatttgaacaaaccactatttttcgccatctgcgattgacaacactg 259  Q
    |||| ||||||||||||| | ||||||||||  ||||| ||||||||||||||    
T  1099104 tagctgaatttgaacaaatcgctatttttcgtgatctgtgattgacaacactg 1099052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University