View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_2 (Length: 516)
Name: NF3104_low_2
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 13481832 - 13481332
Alignment:
| Q |
1 |
agttgcttccactatcatgtccagctccaccacttgcagttggtgtagcagcagctgaaccataagaattcccaaaaaaccactcagttgctgtatctcc |
100 |
Q |
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| T |
13481832 |
agttgcttccactatcatgtccagctccaccacttgcagttggtgtagcagcagctgaaccataagaattcccaaaaaaccactcagttgctgtatctcc |
13481733 |
T |
|
| Q |
101 |
accatttgttcttgaatttccaacagaaaaagctctatcatcttgctttgcaacctcaagattctgaaacaaaatgggttgtagtggcttttctgtatct |
200 |
Q |
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| T |
13481732 |
accatttgttcttgaatttccaacagaaaaagctctatcatcttgctttgcaacctcaagattctgaaacaaaatgggttgtagtggcttttctgtatct |
13481633 |
T |
|
| Q |
201 |
ttctgattttctccaccaccaaaaagcatagataatctttgtt-ctgtagcttccagtgcaagtcttggttcatagaactcaatgattcaatagaagaag |
299 |
Q |
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| T |
13481632 |
ttctgattttctccaccaccaaaaagcatagataatctttgttgctgtagcttccagtgcaagtcttggttcatagaactcaatgattcaatagaagaag |
13481533 |
T |
|
| Q |
300 |
caatattattattgctatgattaatattcattgaactcataccttgtattgcaccattataattacctgatgaaaaaggatagttcatagcagcagcaga |
399 |
Q |
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| T |
13481532 |
caatattattattgctatgattaatattcattgaactcataccttgtattgcaccattataattacctgatgaaaaaggatagttcatagcagcagcaga |
13481433 |
T |
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| Q |
400 |
atttgaagaagcatgatagttattattcatagcagaagaagtttctccaaaagatgaaaactggttatacataggagtagtagaaatttgagggtgatta |
499 |
Q |
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| T |
13481432 |
atttgaagaagcatgatagttattattcatagcagaagaagtttctccaaaagatgaaaactggttatacataggagtagtagaaatttgagggtgatta |
13481333 |
T |
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| Q |
500 |
t |
500 |
Q |
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| T |
13481332 |
t |
13481332 |
T |
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