View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_20 (Length: 266)
Name: NF3104_low_20
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 8097859 - 8098082
Alignment:
| Q |
11 |
cacagaccatgagaaataatgccaagttatcttttgttggaagacaattatcgccaaacaaaaagacaccttcatcgaaacagaattactccaaataata |
110 |
Q |
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| T |
8097859 |
cacaaaccatgagaaataatgccaagttatcttttgttggaagacaa--------------aaagacaccttcatcgaaaccgaattactccaaataata |
8097944 |
T |
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| Q |
111 |
ttaagattttgtgggcaatcaagaatagaacctcccctttgagataggagtttgtaagctcatttgtgatttgattgtgtacttgtcattaagttcaatc |
210 |
Q |
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| T |
8097945 |
tcaagattttgtgggcaatcaagaatagaaccttccctttgagataggagtttataagctcatttgtgatttgattgtgtacttgtcattaagttcaatc |
8098044 |
T |
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| Q |
211 |
ttccaagaccatttgtcaataacattagactgcgaaaa |
248 |
Q |
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| T |
8098045 |
ttccaagaccatttgtcaataacattagactgcaaaaa |
8098082 |
T |
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