View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_25 (Length: 237)
Name: NF3104_low_25
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 30070953 - 30071124
Alignment:
| Q |
57 |
atattgtgttagtttcattatatttaatttttcctgtaattttgacaatagnnnnnnnnnnnnatgtcctcctgtagggaaaatccacatgtattgggtg |
156 |
Q |
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| T |
30070953 |
atattgtgttagtttcattatatttaatttttcctgtaattttgacaatagttctttctttttatgtcctcctgtagggaaaatccagatgtattgggtg |
30071052 |
T |
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| Q |
157 |
tgagactaatccctaatggcacaaagtgtttacatcatgatgtatcagtctaatgacttttctatgatgatg |
228 |
Q |
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| T |
30071053 |
tgaggctaatccctaatggcacaaagtgtttacatcatgatgtatcagtctaatgacttttctatgatgatg |
30071124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 30254948 - 30255046
Alignment:
| Q |
126 |
tcctgtagggaaaatccacatgtattgggtgtgagactaatccctaatggcacaaagtgtttacatcatgatgtatcagtctaatgacttttctatgat |
224 |
Q |
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| T |
30254948 |
tcctatagggcaaatcagcatgtattgggtgcgaggctaatccctaatggcacaaatcgtttacatcatgatgtatcagcctaatgacttttctatgat |
30255046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 30034740 - 30034705
Alignment:
| Q |
189 |
catcatgatgtatcagtctaatgacttttctatgat |
224 |
Q |
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| T |
30034740 |
catcatgatgtatcagtttaatgacttttctatgat |
30034705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 30228878 - 30228843
Alignment:
| Q |
189 |
catcatgatgtatcagtctaatgacttttctatgat |
224 |
Q |
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| T |
30228878 |
catcatgatgtatcagtttaatgacttttctatgat |
30228843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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