View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_26 (Length: 236)
Name: NF3104_low_26
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30070902 - 30070681
Alignment:
| Q |
1 |
aaagaaaaaaggccaatatgctgtttctgaataacctaccaggtggttgcgaagaatggtctacttgagcattcatttgaacgttgcgaacaaattcaat |
100 |
Q |
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| T |
30070902 |
aaagaaaaaaggccaatatgctgtttctgaataacctaccaggtggttgcgaagaatggtctacttgagcattcatttgaacgttgcgaacaaattcaat |
30070803 |
T |
|
| Q |
101 |
catccttagagttctggatattcataaacaagaaaaagcacaacaatgtgagaatgcaaagcgataacaattgatttgtgattggagataatcgattttg |
200 |
Q |
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| T |
30070802 |
catccttagagttctggatattcataaacaagaaaaagcacaacaatgtgagaatgcaaagcgataacaattgatttgtgattggagataatcgattttg |
30070703 |
T |
|
| Q |
201 |
tatagacattaccgtttttgct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30070702 |
tatagacattaccgtttttgct |
30070681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 204
Target Start/End: Complemental strand, 30254799 - 30254595
Alignment:
| Q |
5 |
aaaaaaggccaatatgctgtttctgaataacctaccaggtggttgcgaagaatggtctacttgagcattcatttgaacgttgcgaacaaattcaatcatc |
104 |
Q |
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|||| |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
30254799 |
aaaagaggccagtatgctgattctgaataacctaccaggtggttgcgaagaacggtctacttgagcattcatttgaatgttgcggacaaattcaatcatc |
30254700 |
T |
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| Q |
105 |
cttagagttctggatatt--cat---aaacaagaaaaagca-caacaatgtgagaatgcaaagcgataacaattgatttgtgattggagataatcgattt |
198 |
Q |
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| T |
30254699 |
gttagagttctgaaacataacatttgaaacaagaaaaagcattaacaatgcaagaatgc-aagccataacatttgaattatgatcggagataatcaattt |
30254601 |
T |
|
| Q |
199 |
tgtata |
204 |
Q |
| |
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|||||| |
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| T |
30254600 |
tgtata |
30254595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 160
Target Start/End: Complemental strand, 30282363 - 30282213
Alignment:
| Q |
7 |
aaaaggccaatatgctgtttctgaataacctaccaggtggttgcgaagaatggtctacttgagcattcatttgaacgttgcgaacaaattcaatcatcct |
106 |
Q |
| |
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||||| ||||| ||||| |||||||| |||||||||||||||| |||| || |||||||| |||||| || ||| | ||||| ||| ||||||| |
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| T |
30282363 |
aaaagcccaatgtgctgattctgaat----taccaggtggttgcgaggaattatcgacttgagccttcattcaaattttgaggacaaactcattcatcct |
30282268 |
T |
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| Q |
107 |
tagagttctggatattcataaacaagaaaaagc-acaacaatgtgagaatgcaaa |
160 |
Q |
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| T |
30282267 |
tagagttctggatattcataaacaagaaaaagcaacaacagtgtgagaatgcaaa |
30282213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 30177582 - 30177460
Alignment:
| Q |
90 |
acaaattcaatcatccttagagttctggatattcataaacaagaaaaagcacaacaatgtgagaatgcaaagcgataacaattgatttgtgattggagat |
189 |
Q |
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||||| ||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||| |||||| |||| | |||||||||| |
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| T |
30177582 |
acaaactcaatcacccttagagttctggatactcgcaaacaagaaaaggcacaacaatgtgagaatgc-aagctataacatttgaatcatgattggaga- |
30177485 |
T |
|
| Q |
190 |
aatcgattttgtatagacattaccg |
214 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
30177484 |
catagattttgtatagacattaccg |
30177460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 30793331 - 30793286
Alignment:
| Q |
90 |
acaaattcaatcatccttagagttctggatattcataaacaagaaa |
135 |
Q |
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||||| ||||||||||||||||| ||||||||||| |||||||||| |
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| T |
30793331 |
acaaaatcaatcatccttagagtcctggatattcacaaacaagaaa |
30793286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 30181564 - 30181673
Alignment:
| Q |
97 |
caatcatccttagagttctggatattcataaacaaga--aaaagcacaacaatgtgagaatgcaaagcgataacaatt-gatttgtgattggagataatc |
193 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||| |||| ||| ||| |||||||||||| || |||||| || || | |||| ||||||||| |
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| T |
30181564 |
caatcatccttagagctctggatattcatgaacaagagaaaaaaaacagcaaagtgagaatgcaa-gccataacattttgaatcatgatcggagataatt |
30181662 |
T |
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| Q |
194 |
gattttgtata |
204 |
Q |
| |
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||||||||||| |
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| T |
30181663 |
gattttgtata |
30181673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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