View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_29 (Length: 213)
Name: NF3104_low_29
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5916948 - 5917147
Alignment:
| Q |
1 |
ttaaattccttccactgatcagcatcatgggactgtttgtaaagtggtttggtccaactggttgttgaaagaaagcttacaaatctttattatgctatat |
100 |
Q |
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| T |
5916948 |
ttaaattcctttcactgatcagcatcatgggattgtttgtaaagtggtttggtccaactggttgttgaaagaaagcttacaaatctttattatgctatat |
5917047 |
T |
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| Q |
101 |
acgtcggaagctgatcatatggtgattaatcagcttgcgaatctgattcctaatccatcagcttgcagcaattcagaatcca-tttcatacttgattcat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
5917048 |
acgtcggaagctgatcatatggtgattaatcagcttgcgaatctgattcctaatccatcagcttgcagcaattcagaatcgattttcatacttgattcat |
5917147 |
T |
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