View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3104_low_3 (Length: 495)
Name: NF3104_low_3
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 24 - 480
Target Start/End: Complemental strand, 38336167 - 38335711
Alignment:
| Q |
24 |
ttgagaagttagaatatctaattcactctcaaatttctcactaaaaagttcttcccaaaacccttcatcaagttctttattcaatttctcatgagtctca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38336167 |
ttgagaagttagaatatctaattcactctcaaatttctcactaaaaagttcttcccaaaacccttcatcaagttctttattcaatttctcattagtctca |
38336068 |
T |
|
| Q |
124 |
aatacctcaatctcttcctcatgttctccaccacctcttccaagaccctgcatttccatagccaacatttccaactctgacacttcaaatccatatcgaa |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38336067 |
aatacctcaatctcttcctcatgttctccaccacctcttccaagaccctgcatttccatagccaacatttccaactctgacacttcaaatccatatcgaa |
38335968 |
T |
|
| Q |
224 |
caccgctccttccatcgccaccattacttgattctccatactcaattggccttctcctcttcttagtaatagcatcttcaatctcctttctcttttcctt |
323 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38335967 |
cactactccttccatcgccaccattacttgattctccatactcaattggccttctcctcttcttagtaatagcatcttcaatctcctttctcttttcctt |
38335868 |
T |
|
| Q |
324 |
ctgttgaagtaattgctgaataaaagctggatttttcatagctctagccaaaaaagccatcatttgttgctgcttaatttcggttccacgtagcctttcc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38335867 |
ctgttgaagtaattgctgaataaaagctggatttttcatagctctggccaaaaaagccatcatttgttgctgcttaatttcagttccacgtagcctttcc |
38335768 |
T |
|
| Q |
424 |
tccattgcttgaagaatggatcttgtattatgttgctgttgtctaagcttcacaagt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38335767 |
tccattgcttgaagaatggatcttgtattatgttgctgttgtctaagcttcacaagt |
38335711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University