View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3104_low_5 (Length: 489)
Name: NF3104_low_5
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 12014588 - 12014131
Alignment:
| Q |
19 |
ccaggttactttaatgtttcaattttcactttcctgatcattatccttgatttccttgcgtttattctgacatttgttttannnnnnnnacagacacatt |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
12014588 |
ccaggttactttaatgtttcaagtttcactttcctgatcattatccttgatttccttgcatttattctgacatttgttttattttttttacagacacatt |
12014489 |
T |
|
| Q |
119 |
ttatattgccgatgcagaaggatcaaactggcaaagcggtgacaatagagagaaaagttgggtttgcaagtgccggagcgataaaaactaaagcaaatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12014488 |
ttatattgccgatgcagaaggatcaaactgacaaagcggtgacaatagagagaaaagttgggtttgcaagtgcctgagcgataaaaactaaagcaaatca |
12014389 |
T |
|
| Q |
219 |
tgaggaattcgagttaccagaagaaaacgactttgacgataagattgagattgcacacaaagtcgtcccttctactgtttttggcagtttgattagaaag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12014388 |
tgaggaattcgagttaccagaagaaaacgactttgatgataagattgagattgcacacaaagtcgtcccttctactgtttttggcagtttgattagaaag |
12014289 |
T |
|
| Q |
319 |
agagacgagaatgaaaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttggtgccctcgagagaattaagaac------- |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12014288 |
agagacgagaatgaaaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttggtgccctc--aagaattaagaacctgaaac |
12014191 |
T |
|
| Q |
412 |
----ctaaatgttaggtgagaggattcaagttttatattttgatagcatgaaattgattt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12014190 |
ggaactaaatgttaggtgagaggattcaagttttatattttgatagcatgaaattgattt |
12014131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 193 - 410
Target Start/End: Original strand, 3031964 - 3032181
Alignment:
| Q |
193 |
ggagcgataaaaactaaagcaaatcatgaggaattcgagttaccagaagaaaacgactttga---cgataagattgagattgcacacaaagtcgtccctt |
289 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||| | ||||||||||||||||| |||| ||| |||| | |||||||||||||| |||| ||||||| |
|
|
| T |
3031964 |
ggagggataaaaactaatgcgaaccatgaagaaattgagttaccagaagaaaatgactctgatgacgatgatattgagattgcacaaaaagatgtccctt |
3032063 |
T |
|
| Q |
290 |
ctactgtttttggcagtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggtttgg |
389 |
Q |
| |
|
|| ||||||||||| ||||| ||||||| ||||| |||| |||||||||| ||||| |||| || ||||||||| ||||||||||||| |||| |||| |
|
|
| T |
3032064 |
ctgctgtttttggcggtttggttagaaaaagagatgagattgaaaataat---gaagtagatgatggtgcaaaagagaaggataatgaaagtcggcttgg |
3032160 |
T |
|
| Q |
390 |
tgccctcgagagaattaagaa |
410 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
3032161 |
tgcccttgagagaattaagaa |
3032181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 287 - 410
Target Start/End: Complemental strand, 11993359 - 11993235
Alignment:
| Q |
287 |
cttctactgtttttggca-gtttgattagaaagagagacgagaatgaaaataatggagaagtggatggtgatgcaaaagacaaggataatgaaaatcggt |
385 |
Q |
| |
|
|||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| | |
|
|
| T |
11993359 |
cttctactgtttttggaaagtctgattagaaagagagacgattatgaaaataatggagaagtagatggtgatgccaaagaaaaggataatgaagatcgat |
11993260 |
T |
|
| Q |
386 |
ttggtgccctcgagagaattaagaa |
410 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11993259 |
ttggtgccctcgagagaattaagaa |
11993235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 3031900 - 3031941
Alignment:
| Q |
150 |
caaagcggtgacaatagagagaaaagttgggtttgcaagtgc |
191 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| |||||| |
|
|
| T |
3031900 |
caaagcagtgacaaaagagagaaaagttgggtttgtaagtgc |
3031941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University