View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3104_low_6 (Length: 485)

Name: NF3104_low_6
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3104_low_6
NF3104_low_6
[»] scaffold0590 (1 HSPs)
scaffold0590 (8-261)||(5017-5270)
[»] chr1 (8 HSPs)
chr1 (26-271)||(52946034-52946277)
chr1 (58-271)||(52938402-52938615)
chr1 (1-112)||(11398264-11398374)
chr1 (3-113)||(18136413-18136520)
chr1 (18-113)||(31230343-31230436)
chr1 (26-112)||(52935150-52935234)
chr1 (26-112)||(52942785-52942869)
chr1 (240-325)||(41671766-41671851)
[»] chr2 (1 HSPs)
chr2 (1-113)||(42735259-42735371)
[»] chr7 (5 HSPs)
chr7 (1-117)||(47762048-47762162)
chr7 (102-155)||(21905895-21905948)
chr7 (5-82)||(20290674-20290749)
chr7 (59-109)||(25998383-25998433)
chr7 (238-278)||(21905766-21905806)
[»] chr5 (2 HSPs)
chr5 (8-112)||(10548172-10548274)
chr5 (1-90)||(20319526-20319612)
[»] chr4 (4 HSPs)
chr4 (26-112)||(40225492-40225576)
chr4 (1-90)||(5373880-5373966)
chr4 (1-90)||(17225238-17225324)
chr4 (125-157)||(18421282-18421314)
[»] chr3 (4 HSPs)
chr3 (1-92)||(7051110-7051198)
chr3 (104-151)||(13587417-13587464)
chr3 (18-82)||(30174410-30174472)
chr3 (41-112)||(52098928-52099000)
[»] chr8 (1 HSPs)
chr8 (111-151)||(44765090-44765130)


Alignment Details
Target: scaffold0590 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 5017 - 5270
Alignment:
Q  8 catcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactca 107  Q
    ||||||| || || ||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5017 catcacacatatttcatgcttatttccttggcttttctcatatttatataagggtccatattcctatttcccataatgccccttctaactctaagactca 5116  T
Q  108 ttacattaccatcccctttaaaatcaaccttgtcctcaaggttgaagccaaaattataatgttgaatagcagttgtaatagtgactttcatgtaactgct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||| ||||| |||    
T  5117 ttacattaccatcccctttaaaatcaaccttgtcctcaaggttgaagccaaaataataatgttgaatagtagttgtagtagtgactttcaagtaaccgct 5216  T
Q  208 gacgtcaaataaaccttgcccaccgataagagaacatccacccggatcccattg 261  Q
     | |||| |||||||||||||||  |||||||||||||||||||||||||||||    
T  5217 aaagtcacataaaccttgcccacaaataagagaacatccacccggatcccattg 5270  T

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Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 26 - 271
Target Start/End: Complemental strand, 52946277 - 52946034
Alignment:
Q  26 cttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactcattacattaccatcccctt 125  Q
    ||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52946277 cttatttccttggcttttctcatatttataag--ggtccatattcctatttcccataatgccccttctaactctaagactcattacattaccatcccctt 52946180  T
Q  126 taaaatcaaccttgtcctcaaggttgaagccaaaattataatgttgaatagcagttgtaatagtgactttcatgtaactgctgacgtcaaataaaccttg 225  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||| || ||| ||| |||||||||||| ||||||||| | |||| ||||||||||    
T  52946179 taaaatcaaccttgtcctcaaggttgaagccaagataataatgttgaagagtagtagtactagtgactttcaagtaactgctaaagtcacataaaccttg 52946080  T
Q  226 cccaccgataagagaacatccacccggatcccattggtagaattgt 271  Q
    ||| |  | |||||||||||||||||| |||||||| | |||||||    
T  52946079 ccctcgaacaagagaacatccacccgggtcccattgttggaattgt 52946034  T

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Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 58 - 271
Target Start/End: Complemental strand, 52938615 - 52938402
Alignment:
Q  58 agggtccatattcctatttcccataatgccccttctaactctaagactcattacattaccatcccctttaaaatcaaccttgtcctcaaggttgaagcca 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52938615 agggtccatattcctatttcccataatgccccttctaactctaagactcattacattaccatcccctttaaaatcaaccttgtcctcaaggttgaagcca 52938516  T
Q  158 aaattataatgttgaatagcagttgtaatagtgactttcatgtaactgctgacgtcaaataaaccttgcccaccgataagagaacatccacccggatccc 257  Q
    | || ||||||||||| || ||| ||| |||||||||||| ||||||||| | |||| ||||||||||||| |  | |||||||||||||||||| ||||    
T  52938515 agataataatgttgaagagtagtagtactagtgactttcaagtaactgctaaagtcacataaaccttgccctcgaacaagagaacatccacccgggtccc 52938416  T
Q  258 attggtagaattgt 271  Q
    |||| | |||||||    
T  52938415 attgttggaattgt 52938402  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 11398264 - 11398374
Alignment:
Q  1 agagtttcatcacatatttt-ccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactct 99  Q
    |||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||  ||||||||||||||||| |||||||||| |||||||||||    
T  11398264 agagtttcatcacatatttttccatccttatttccttggcttttctcatatttataag--ggtccatattcctattttccataatgccacttctaactct 11398361  T
Q  100 aagactcattaca 112  Q
    |||||||||||||    
T  11398362 aagactcattaca 11398374  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 18136520 - 18136413
Alignment:
Q  3 agtttcatcacatattttccatgcttattttcttgcctttt-ctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaa 101  Q
    |||| ||||||||||||  ||||||||||| |||| ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  18136520 agttacatcacatattt--catgcttatttccttggctttttctcatatttataag--ggtccatattcctatttcccataatgccccttctaactctaa 18136425  T
Q  102 gactcattacat 113  Q
    ||||||||||||    
T  18136424 gactcattacat 18136413  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 31230343 - 31230436
Alignment:
Q  18 tttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactcattacat 113  Q
    ||||||||||||||   |||  ||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31230343 tttccatgcttattccattggtttttctcatatttataag--ggtccatattcctatttcccataacgccccttctaactctaagactcattacat 31230436  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 52935234 - 52935150
Alignment:
Q  26 cttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 112  Q
    ||||||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  52935234 cttatttccttggcttttctcatatttataag--ggtccatattcctatttcccataatgccccttctaacttttagactcattaca 52935150  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 52942869 - 52942785
Alignment:
Q  26 cttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 112  Q
    ||||||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  52942869 cttatttccttggcttttctcatatttataag--ggtccatattcctatttcccataatgccccttctaacttttagactcattaca 52942785  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 41671851 - 41671766
Alignment:
Q  240 aacatccacccggatcccattggtagaattgtaaggaccacaaattaagatgtgaaggtaataagtaaaatccaaacattatggtc 325  Q
    |||||||| | ||||||||||||| |||||||| | |||||| |||||||||||||  |  |||| ||||||||||||||| ||||    
T  41671851 aacatccatctggatcccattggtggaattgtacgcaccacatattaagatgtgaacatcgtaagcaaaatccaaacattagggtc 41671766  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 42735371 - 42735259
Alignment:
Q  1 agagtttcatcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactcta 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42735371 agagtttcatcacatatttttcatgcttatttccttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactcta 42735272  T
Q  101 agactcattacat 113  Q
    |||||||||||||    
T  42735271 agactcattacat 42735259  T

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Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 47762162 - 47762048
Alignment:
Q  1 agagtttcatcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactcta 100  Q
    ||||||||||||||||||||| || ||||||| |||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  47762162 agagtttcatcacatattttcaatccttatttccttggcttttctcatatttataag--ggtccatattcctattttccataatgccccttctaactcta 47762065  T
Q  101 agactcattacattacc 117  Q
    |||||||||||| ||||    
T  47762064 agactcattacagtacc 47762048  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 21905948 - 21905895
Alignment:
Q  102 gactcattacattaccatcccctttaaaatcaaccttgtcctcaaggttgaagc 155  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21905948 gactcattacattaccttcccctttaaaatcaaccttgtcctcaaggttgaagc 21905895  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 20290674 - 20290749
Alignment:
Q  5 tttcatcacatattttccatg-cttattttcttgccttttctcatatttataagagggtccatattcctatttcccata 82  Q
    ||||||||||||||||||||| ||||||| |||| | |||||| ||||||||  ||||||||||||| ||||| |||||    
T  20290674 tttcatcacatattttccatgtcttatttgcttggc-tttctcttatttata--agggtccatattcatatttaccata 20290749  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 25998383 - 25998433
Alignment:
Q  59 gggtccatattcctatttcccataatgccccttctaactctaagactcatt 109  Q
    ||||| |||||||||||| |||||||||  |||||||||||| ||||||||    
T  25998383 gggtctatattcctattttccataatgcatcttctaactctatgactcatt 25998433  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 21905806 - 21905766
Alignment:
Q  238 agaacatccacccggatcccattggtagaattgtaaggacc 278  Q
    ||||||||||||||||||||||||||  |||||| ||||||    
T  21905806 agaacatccacccggatcccattggttaaattgtgaggacc 21905766  T

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Target: chr5 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 10548274 - 10548172
Alignment:
Q  8 catcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactca 107  Q
    ||||||| || |||||| ||||||| |||| ||||||||||||||||||   ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10548274 catcacacatattccatacttatttccttggcttttctcatatttataaa--ggtccatattcctattttccataatgccccttctaactctaagactca 10548177  T
Q  108 ttaca 112  Q
    |||||    
T  10548176 ttaca 10548172  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20319526 - 20319612
Alignment:
Q  1 agagtttcatcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgcccct 90  Q
    |||||||||||||| || || ||||||||||| || | |||||||| ||||||||  ||||||| |||| |||||||||||| |||||||    
T  20319526 agagtttcatcacacatatttcatgcttatttcctggacttttctcttatttata--agggtcc-tatttctatttcccatattgcccct 20319612  T

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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 40225492 - 40225576
Alignment:
Q  26 cttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttctaactctaagactcattaca 112  Q
    ||||||| |||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40225492 cttatttccttggcttttctcatatttattag--ggtccatattcctatttcccataatgccccttctaactctaagactcattaca 40225576  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5373880 - 5373966
Alignment:
Q  1 agagtttcatcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgcccct 90  Q
    |||||||||||||| ||||| ||||||||||| |||| |||||||| ||||||||  ||||||| |||| |||||||||||| |||||||    
T  5373880 agagtttcatcacacatttttcatgcttatttccttgacttttctcttatttata--agggtcc-tatttctatttcccatattgcccct 5373966  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17225238 - 17225324
Alignment:
Q  1 agagtttcatcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgcccct 90  Q
    ||||||||||||||||| ||||||||||| || |||| |||||||| ||||||||  ||||||| |||| |||||||||||| |||||||    
T  17225238 agagtttcatcacatatcttccatgcttacttccttggcttttctcttatttata--agggtcc-tatttctatttcccatattgcccct 17225324  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 18421314 - 18421282
Alignment:
Q  125 ttaaaatcaaccttgtcctcaaggttgaagcca 157  Q
    |||||||||||||| ||||||||||||||||||    
T  18421314 ttaaaatcaaccttctcctcaaggttgaagcca 18421282  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7051198 - 7051110
Alignment:
Q  1 agagtttcatcacatattttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccataatgccccttc 92  Q
    |||||||||||||||||||||||| ||||||| ||||   |||||| ||||||||  ||||||||||||||| ||||||||| | |||||||    
T  7051198 agagtttcatcacatattttccatccttatttccttg-gatttctcttatttata--agggtccatattcctttttcccatattaccccttc 7051110  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 13587417 - 13587464
Alignment:
Q  104 ctcattacattaccatcccctttaaaatcaaccttgtcctcaaggttg 151  Q
    ||||| ||||||||| || |||| ||||||||||||||||||||||||    
T  13587417 ctcataacattaccaccctctttgaaatcaaccttgtcctcaaggttg 13587464  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30174410 - 30174472
Alignment:
Q  18 tttccatgcttattttcttgccttttctcatatttataagagggtccatattcctatttcccata 82  Q
    ||||||||||||||| |||| |||||||| ||||||||  ||| |||||||||||  ||||||||    
T  30174410 tttccatgcttatttccttggcttttctcttatttata--aggatccatattccttattcccata 30174472  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 52099000 - 52098928
Alignment:
Q  41 tttctcatatttataagagggtccatattcctatttcccataatgccc---cttctaactctaagactcattaca 112  Q
    ||||| |||||||||||  |||| |||||||||||| | |||||| ||   ||||||||||||||||||||||||    
T  52099000 tttcttatatttataag--ggtctatattcctattttctataatgtcctttcttctaactctaagactcattaca 52098928  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 44765130 - 44765090
Alignment:
Q  111 cattaccatcccctttaaaatcaaccttgtcctcaaggttg 151  Q
    |||||||| |||||| || ||||||||||||||||||||||    
T  44765130 cattaccaaccccttcaagatcaaccttgtcctcaaggttg 44765090  T

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