View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3104_low_8 (Length: 425)
Name: NF3104_low_8
Description: NF3104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3104_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 408
Target Start/End: Complemental strand, 42150449 - 42150053
Alignment:
| Q |
12 |
atgagctgatatccacttgtttgaaaatgattgcgctgtcaagtatttgggttgcctaagtaagtgctctagattctcatatattttattatagcctgtt |
111 |
Q |
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| T |
42150449 |
atgagctgatatccacttgtttgaaaatgattgcgctgtcaagtatttgggttgcctaagtaagtgctctagattctcatatattttattatagcctgtt |
42150350 |
T |
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| Q |
112 |
acattaaattgtaatcactgacgccatttcacaaaacagaatagtatttatgttgtcccaaattatttgtctttccggttgaaaaatataagctaatgtt |
211 |
Q |
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| T |
42150349 |
acattaaattgtaattactgacgccatttcacaaaacagaatagtatttatgttgtcccaaattattcgtctttccggttgaaaaatataagctaatgtt |
42150250 |
T |
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| Q |
212 |
tggcagacaagttagaacagaacagaaaatgttcgatacgtgttaaaaataaaacatgacttgaagaaacggagtgcttatacattttgacttcattgca |
311 |
Q |
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| T |
42150249 |
tggcagacaagttagaacagaacagaaaatgttcgatacgtgttaaaaataaaacatgacttgaagaaacggagtgcttatacattttgacttcattgca |
42150150 |
T |
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| Q |
312 |
tagaacggaagcaaagatatgaagttccattcttttcatatgccatacactaccttggttgtatttgttatttagtttgagtttgtttgttgcaagt |
408 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42150149 |
tagaacggaagcaaagatatcaagttccattcttttcatatgccatacactaccttggttgtatttgttatttagtttgagtttgtttgttgcaagt |
42150053 |
T |
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