View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_high_12 (Length: 332)
Name: NF3106_high_12
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 321
Target Start/End: Complemental strand, 11484948 - 11484813
Alignment:
| Q |
186 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctacacatttagattcaaaggtcttttgccaacaa |
285 |
Q |
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| T |
11484948 |
ttacctatatttttaataggctaaatcaactttaaacttattctattggactaatatgaatgaatctaaacatttagattcaaaggtcttttgccaacaa |
11484849 |
T |
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| Q |
286 |
gttgaacaagttgcgcatcttctcaagtttgttcat |
321 |
Q |
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| T |
11484848 |
gttgaacaagttgcgcatcttctcaagtttgttcat |
11484813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 11485041 - 11484981
Alignment:
| Q |
93 |
caaaactaaatatatagtatttggtggaatgtatgaatgagttttactatatcaaattgtc |
153 |
Q |
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| T |
11485041 |
caaaattaaatatatagtatttggtggaatgtatgaaagagttttactatatcaaattgtc |
11484981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 11485149 - 11485077
Alignment:
| Q |
19 |
atatgggaacaatacatagacnnnnnnntaataataaaagcctatgcaaccaaactaaatattttttcagaga |
91 |
Q |
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| T |
11485149 |
atatgggaacaatacatagacaaaaaaataataaagaaagcctatccaaccaaactaaatattttttcagaga |
11485077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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