View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_high_13 (Length: 323)
Name: NF3106_high_13
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 40321719 - 40321602
Alignment:
| Q |
128 |
ctaaaatatttgcgcattgatatgctttcctataagaatattcctcacaacaacttctcaatccattgctaaaagaatctgaattttcgcaaccaaggct |
227 |
Q |
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| T |
40321719 |
ctaacatatttgcgcattgatatgctttcctataagaat--tcctcacaacaacttctcaatccattgctaaaagaatctgaattttcgcaaccaaggct |
40321622 |
T |
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| Q |
228 |
ttatccatatgactatcatc |
247 |
Q |
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| T |
40321621 |
ttatccatatgactatcatc |
40321602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 40313841 - 40313766
Alignment:
| Q |
247 |
cctctacaactcgaaacctcaagtttctagcataactcaaccctttatacgctcccatagctctaccatatacgca |
322 |
Q |
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| T |
40313841 |
cctctacaactcgaaaccccaagtttctagcataactaaaccctttatacgctcccagagctctaccatatacgca |
40313766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 40321839 - 40321773
Alignment:
| Q |
67 |
atatatatataatgaaagtattacctgaaattaaattaaagtatgaaatatgtaattt-agtctaaa |
132 |
Q |
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| T |
40321839 |
atatatatataatgaaagtattacctgaaattaaatttaagtatgaaatatgtaatttgagtctaaa |
40321773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 40321933 - 40321889
Alignment:
| Q |
8 |
attatactgttcattttatttaatgcaaatcaaggattaagtttg |
52 |
Q |
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| T |
40321933 |
attatactgttcattttatttaatgcaagtcaaggattaaatttg |
40321889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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