View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_high_16 (Length: 279)
Name: NF3106_high_16
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 33223219 - 33222958
Alignment:
| Q |
1 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaaataacttttggtttttagtttgtggttctttannnnnn |
100 |
Q |
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| T |
33223219 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaaataacttttggtttttagtttgtggttctttatttttt |
33223120 |
T |
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| Q |
101 |
nnnatttgtttacattctttatatatggactaatataccttaagcaaaagaaaagatagcagcagaattagcatcgaagtggaatcgaaaggaggaataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223119 |
tttatttgtttacattctttatatatggactaatataccttaagcaaaagaaaagatagcagcagaattagcatcgaagtggaatcgaaaggaggaataa |
33223020 |
T |
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| Q |
201 |
agcttccctttcaattccaatcaattaaccaaaagaaaatatttgattttagttatgcttat |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223019 |
agcttccctttcaattccaatcaattaaccaaaagaaaatatttgattttagttatgcttat |
33222958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33226189 - 33226128
Alignment:
| Q |
1 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgacatcaaataaa |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33226189 |
caaagggaaagtctaaaattatatttttctcaattgtagtatttaaaatgatatcaaataaa |
33226128 |
T |
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