View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_high_2 (Length: 527)
Name: NF3106_high_2
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 13797004 - 13796519
Alignment:
| Q |
20 |
gttgtcatttgtaacatgaatataagctacaatctattacagaatttattgattgaatagtattcacttttcagcaaactctatcttccatcatgtttga |
119 |
Q |
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| T |
13797004 |
gttgtcatttgtaacatgaatataagctacaatctattacagaatttattgattgaataatattcacttttcagcaaactctatcttccatcatgtttga |
13796905 |
T |
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| Q |
120 |
gaattgctttgatggtatcagagcaggttcctcttgctctacttccgcttcgtgaagattgaacgaattatccattgattttgtttatcttcttctttca |
219 |
Q |
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| T |
13796904 |
gaattgctttgatggtatcagagcaggtttgtcttgctctacttccgcttcgtgaagattgaacgaattatccattgattttgtttatcttcttctttca |
13796805 |
T |
|
| Q |
220 |
tgtttaatcgatccgctgtcgtttcaannnnnnnatcattttcatcttaatatgtttttcatcgattcattatcgttttgatttgttcttgtttcgtttc |
319 |
Q |
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| T |
13796804 |
tgtttaatcgatcttctgtcgtttcgatttttttatcattttcatcttaa------------cgattcattatcgttttgatttgttcttgtttcgtttc |
13796717 |
T |
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| Q |
320 |
tttgattcaactacgtgttagtttcttaattgattagtttaagatatttcgtagatcatggtgagaaataacaacaatgcacaaaatcaagctcaaggtc |
419 |
Q |
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| T |
13796716 |
tttgattcaactacgtgttagtttcttaattgattagtttaagaaatttcgtagatcatggtgagaaataacaacaatgcacaaaatcaagctcaaggtc |
13796617 |
T |
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| Q |
420 |
ttgatctttactttgttcatccatcaaagaattaaacaactgcgagtctgatgtcgcagtttattggtgataattatcattcctagtccatgatgatg |
517 |
Q |
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| T |
13796616 |
ttgatctttactttgttcatccatcaaagaattaaacaactgtgagtctgatggcacagtttattggtgataattatcattcctagtccatgaagatg |
13796519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 13470172 - 13470301
Alignment:
| Q |
87 |
ttttcagcaaactctatcttccatcatgtttgagaattgctttgatggtatcagagcaggttcctcttgctctacttccgcttcgtgaagattgaacgaa |
186 |
Q |
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|||||| |||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| ||||||| ||||||||| || |
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| T |
13470172 |
ttttcaccaaattctatattctctcatgtttgagaattgatttgatggtatcagagcaggttcgtccggctctgcttccacttcgtg-agattgaacaaa |
13470270 |
T |
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| Q |
187 |
ttatccattgattttgtttatcttcttcttt |
217 |
Q |
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| T |
13470271 |
tcatccattgatttcgtccatcttcatcttt |
13470301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 9717476 - 9717362
Alignment:
| Q |
83 |
tcacttttcagcaaactctatc-ttccatcatgtttgagaattgctttgatggtatcagagcaggttcctcttgctctacttccgcttcgtgaagattga |
181 |
Q |
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| T |
9717476 |
tcacttttcagcaaactttatcgtttcct-atggttgagaattgttttgatagtattagaggaggttcgtcttgctctgctttcgcttcgtgaagattga |
9717378 |
T |
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| Q |
182 |
acgaattatccattga |
197 |
Q |
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| T |
9717377 |
acgaattttcgattga |
9717362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 28584634 - 28584555
Alignment:
| Q |
365 |
atttcgtagatcatggtgagaaataacaacaatgcacaaaatcaagctcaaggtcttgatctttactttgttcatccatc |
444 |
Q |
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| T |
28584634 |
atttcgaaaatcatggtgagaaataacaacaatgcgcagaattaagatcaaggtcttgatccttattttgttcatccatc |
28584555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 28584861 - 28584788
Alignment:
| Q |
110 |
tcatgtttgagaattgctttgatggtatcagagcaggttcctcttgctctacttccgcttcgtgaagattgaac |
183 |
Q |
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||||||||||||| | ||| ||||||||||||||||||| || |||||| |||| | |||||||||||||||| |
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| T |
28584861 |
tcatgtttgagaagtacttacatggtatcagagcaggttcgtcctgctctgcttcagtttcgtgaagattgaac |
28584788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 13583743 - 13583629
Alignment:
| Q |
83 |
tcacttttcagcaaactctatc-ttccatcatgtttgagaattgctttgatggtatcagagcaggttcctcttgctctacttccgcttcgtgaagattga |
181 |
Q |
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| T |
13583743 |
tcacttttcagcaaactttatcgtttcct-atggttgagaattgttttgatagtattagaggaggttcgtcttgctctgctttcgcttcgtgaagattga |
13583645 |
T |
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| Q |
182 |
acgaattatccattga |
197 |
Q |
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| T |
13583644 |
acgaattttcgattga |
13583629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 23969890 - 23969943
Alignment:
| Q |
130 |
gatggtatcagagcaggttcctcttgctctacttccgcttcgtgaagattgaac |
183 |
Q |
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| T |
23969890 |
gatggtattagagcaagttcgtcctgctctgcttccgcttcgtgaagattgaac |
23969943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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