View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_high_3 (Length: 517)
Name: NF3106_high_3
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 37 - 500
Target Start/End: Complemental strand, 32450498 - 32450036
Alignment:
| Q |
37 |
cacattaaaaatgaaagattatattctaaccaaggaaagggagatcaaaagaaagacnnnnnnntccctagtccttaatataatcatataattacccaaa |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32450498 |
cacattaaaaatgaaagattatattctaaccaaggaaaggg-gatcaaaagaaagacaaaaaaatccctagtccttaatataatcatataattacccaaa |
32450400 |
T |
|
| Q |
137 |
aaagaagaaatattttttggaatttttcatggctcatcagtccacctagcaccctatttccaaaaatatatttacgaggcaccacctgtccctaacatga |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32450399 |
aaagaagaaatattttttggaatttttcatggctcatcagtccacctagcaccctatttccaaaaatatatttacgaggcaccacctgtccctaacatga |
32450300 |
T |
|
| Q |
237 |
cgatccactcgatcataaggttaatatttaatttccccaatacccaaaatggcatccaatcttaatctattttaatgaaatatcacacacacaatgtgtc |
336 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32450299 |
cgatccactcgttcataaggttaatatttaatttccccaatacccaaaatggcatccaatcttaatctattttaatgaaatatcacacacacaatgtgtc |
32450200 |
T |
|
| Q |
337 |
ttgatcctccaaaagaagtaagcaatctaacacctggggtatacccattggggatctagtaattttcatatttgaaaaagctcaccactattaatatttt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32450199 |
ttgatcctccaaaagaagtaagcaatctaacacctggggtatacccattggggatctagtaattttcatatttgaaaaagctcaccactattaatatttt |
32450100 |
T |
|
| Q |
437 |
atgtatcataccttatatatgctttcttaatttgtaacttagtgtctagatacataagtctcat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32450099 |
atgtatcataccttatatatgctttcttaatttgtaacttagtgtctagatacataagtctcat |
32450036 |
T |
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