View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3106_high_7 (Length: 392)
Name: NF3106_high_7
Description: NF3106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3106_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 31438451 - 31438818
Alignment:
| Q |
5 |
caccaacaaccacccgtcatcaacttatagggtgcatgcaccaacacatcttaaggttgtctataaaaacaagacacaatgaacgtctaaaaccatctca |
104 |
Q |
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| T |
31438451 |
caccaacaaccacccgtcatcaacttatagggtgcatgcaccaacacatcttaaggttgtctataaaaacaagacacaatgaacgtctaaaaccatctca |
31438550 |
T |
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| Q |
105 |
atcacttgcaaacaacacacatatataaaagaacaaaacttgcaccaagagtgaaagatcaatatctactactctcttaagtaaaatatagtataataat |
204 |
Q |
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| T |
31438551 |
atcacttgcaaac--------tatataaaagaacaaaacttgcaccaagagtgaaagatcaatatctactactctcttaagtaaaatatagtataataat |
31438642 |
T |
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| Q |
205 |
ggcaaaacattgttctaaagattctagtgcagctaccatcctctcaaaatgcactgttttcccagaccaaaaatcgaccctagcagacctgaaactttct |
304 |
Q |
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| T |
31438643 |
ggcaaaacattgttctaaagattctagtgcagttaccatcctctcaaaatgcactgttttcccagaccaaaaatcgaccctagcagacctcaaactttct |
31438742 |
T |
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| Q |
305 |
atctcagaccttaacatgatatgttgccattacatccaaaaaggcaatctctccacatcaccatctctcccttctc |
380 |
Q |
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| T |
31438743 |
atctcagaccttaacatgatatgttgccattacatccaaaagggcaatctcttcacatcgccatctctcccttctc |
31438818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 31436538 - 31436611
Alignment:
| Q |
11 |
caaccacccgtcatcaacttata-gggtgcatgcaccaacacatcttaaggttgtctataaaaacaagacacaa |
83 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
31436538 |
caaccacctgtcatcaacttttaagggtgcatgcaccaacacaccttaaggctgtctataaaaacaagacacaa |
31436611 |
T |
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